GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002704-TA|BGIBMGA002704-PA|IPR002345|Lipocalin,
IPR011038|Calycin-like, IPR013208|Lipocalin-like
         (170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   3.4  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   4.5  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   6.0  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   6.0  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)

Query: 134 NPPKSVLDAAYDAIDK 149
           NPPK VLDAA  +ID+
Sbjct: 45  NPPKFVLDAAKKSIDE 60


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 34  EFGGKCVTADYKLRDDGAIRVL-NKQIDIFSGIQKEIK 70
           +FG  CV+ DY+L  +    V  N  ID F  +   I+
Sbjct: 119 KFGCVCVSVDYRLAPESKFPVAHNDAIDSFKWVASNIE 156


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)

Query: 129 LTRQQNPPKSVLD 141
           LTR  NPPKS+LD
Sbjct: 511 LTRYTNPPKSLLD 523


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 141 DAAYDAIDKNRISRKFFLKTDQSDCTN 167
           DA YD ++KN  S+ FF+   Q    N
Sbjct: 472 DALYDIVEKNHGSQGFFVHAMQVAAAN 498


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 843,357
Number of Sequences: 5004
Number of extensions: 33068
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 4
length of query: 170
length of database: 2,362,478
effective HSP length: 68
effective length of query: 102
effective length of database: 2,022,206
effective search space: 206265012
effective search space used: 206265012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)