GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002704-TA|BGIBMGA002704-PA|IPR002345|Lipocalin,
IPR011038|Calycin-like, IPR013208|Lipocalin-like
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0592 - 24171698-24172285                                         65   3e-11
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    60   1e-09
04_04_1227 - 31882500-31882778,31883039-31883329,31883555-318838...    48   5e-06
06_01_0030 - 296681-296789,296903-297105,297348-297426,297512-29...    29   2.6  
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857...    27   8.0  

>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 61/167 (36%), Positives = 78/167 (46%), Gaps = 17/167 (10%)

Query: 7   DVKAMENFDPARYLGKWYE-AEKYFFLFEFGGKCVTADYKLRDDGA-IRVLNKQIDIFSG 64
           ++  +   D ARY+G+WYE A    F     G+   A Y LR DGA + VLN +    SG
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLN-ETWTSSG 71

Query: 65  IQKEIKGEATQVG-RSDEAKLSVRF---PTLPV-DVAAPYWV--VDTDYDNYAVVWSCYE 117
            +  IKG A +    SDEAKL V+F   P LPV  V   YWV  VD DY  YA+V     
Sbjct: 72  KRDYIKGTAYKADPASDEAKLKVKFYLPPFLPVIPVVGDYWVLYVDDDY-QYALV----- 125

Query: 118 FGIFHTVNSWILTRQQNPPKSVLDAAYDAIDKNRISRKFFLKTDQSD 164
            G     + WIL RQ +    V     +   +     +   KT Q D
Sbjct: 126 -GEPRRKDLWILCRQTSMDDEVYGRLLEKAKEEGYDVEKLRKTPQDD 171


>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 8   VKAMENFDPARYLGKWYEAEKYFFLFE-FGGKCVTADYKLRDDGAIRVLNKQIDIFSGIQ 66
           +K + N D  RY+G+WYE   +   F+   G    A Y L  DGA++VLN+      G +
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWT--DGRR 58

Query: 67  KEIKGEATQVGR-SDEAKLSVRF---PTLPV-DVAAPYWVVDTDYDNYA 110
             I+G A +    SDEAKL V+F   P LP+  V   YWV+  D D Y+
Sbjct: 59  GHIEGTAYRADPVSDEAKLKVKFYVPPFLPIFPVVGDYWVLHVD-DAYS 106


>04_04_1227 -
           31882500-31882778,31883039-31883329,31883555-31883800,
           31884212-31884353,31884583-31884653
          Length = 342

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 24/123 (19%)

Query: 12  ENFDPARYLGKWYEAEKYFFLFEFGGK----CVTADYKLRD----------------DGA 51
           +NFDP RY G+W+E       F   G+    C    Y   +                DG 
Sbjct: 120 KNFDPIRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYSFDEKSRSIQVDTFCVHGGPDGY 179

Query: 52  IRVLNKQIDIFSGIQKEIKGEATQVGRSD--EAKLSVRFPTLPVDVAAPYWVVDTDYDNY 109
           I  +  ++   S  ++++    T + R +  + K  +RFPTLP     PY V+ TDYDNY
Sbjct: 180 ITGIRGRVQCLS--EEDMASAETDLERQEMIKGKCFLRFPTLPFIPKEPYDVLATDYDNY 237

Query: 110 AVV 112
           AVV
Sbjct: 238 AVV 240


>06_01_0030 -
           296681-296789,296903-297105,297348-297426,297512-297877,
           298590-298956,299235-299373,299461-299731,299849-299958,
           300567-300704
          Length = 593

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 33  FEFGGKCVTADYKLRDDGAIRVLNKQIDIFSGIQKEIKGEATQVGRSDEAK--LSVRFPT 90
           F +G   V+  YKLR++  + +  K+    SGI         ++    + K   ++ FPT
Sbjct: 358 FHYGSINVSQVYKLRNEPPVTINGKKRTTLSGISFSPPDTPMRLADLYDKKGVYTLDFPT 417

Query: 91  LPVD--VAAPYWVVDTDYDNY 109
           +P+D        V+++ Y N+
Sbjct: 418 MPIDGPPVMKTSVINSTYKNF 438


>01_06_1676 -
          39084928-39085016,39085462-39085555,39085664-39085750,
          39085941-39086073,39086451-39086724,39086863-39086989,
          39087095-39087345,39087476-39087575
          Length = 384

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 48 DDGAIRVLNKQIDIFSGIQKEIKGEATQVGRSDEAKLSVRFPTLPVD 94
          ++G  +VL    D   G+ K +K  AT+  +   + L++  P L +D
Sbjct: 21 ENGHAKVLTSNAD---GVTKGLKDSATEKAQPQNSALTINIPVLSLD 64


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,275,515
Number of Sequences: 37544
Number of extensions: 205650
Number of successful extensions: 347
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 6
length of query: 170
length of database: 14,793,348
effective HSP length: 77
effective length of query: 93
effective length of database: 11,902,460
effective search space: 1106928780
effective search space used: 1106928780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)