Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002704-TA|BGIBMGA002704-PA|IPR002345|Lipocalin,
IPR011038|Calycin-like, IPR013208|Lipocalin-like
(170 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 135 8e-32
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 135 8e-32
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 135 8e-32
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 135 8e-32
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 135 8e-32
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 135 8e-32
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 135 8e-32
S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein. 76 7e-14
X00129-1|CAA24959.1| 199|Homo sapiens protein ( Human mRNA for ... 46 7e-05
BC020633-1|AAH20633.1| 201|Homo sapiens retinol binding protein... 46 7e-05
AL356214-6|CAH72329.1| 199|Homo sapiens retinol binding protein... 46 7e-05
AL356214-5|CAH72328.1| 201|Homo sapiens retinol binding protein... 46 7e-05
X02824-1|CAB46489.1| 70|Homo sapiens protein ( Human gene frag... 36 0.071
AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of Charl... 29 6.2
AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein. 29 6.2
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 135 bits (326), Expect = 8e-32
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 3 GQCPDVKAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNKQIDIF 62
G+CP+ ENFD +YLG+WYE EK FE G+C+ A+Y L ++G I+VLN+++
Sbjct: 26 GKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA- 83
Query: 63 SGIQKEIKGEATQVGRSDEAKLSVRFPTLPVDVAAPYWVVDTDYDNYAVVWSC-YEFGIF 121
G +I+GEAT V ++ AKL V+F +APYW++ TDY+NYA+V+SC +F
Sbjct: 84 DGTVNQIEGEATPVNLTEPAKLEVKFSWFM--PSAPYWILATDYENYALVYSCTCIIQLF 141
Query: 122 HTVNSWILTRQQNPPKSVLDAAYDAIDKNRISRKFFLKTDQSDC 165
H +WIL R N P +D+ + + N I K TDQ +C
Sbjct: 142 HVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNC 185
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 135 bits (326), Expect = 8e-32
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 3 GQCPDVKAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNKQIDIF 62
G+CP+ ENFD +YLG+WYE EK FE G+C+ A+Y L ++G I+VLN+++
Sbjct: 26 GKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA- 83
Query: 63 SGIQKEIKGEATQVGRSDEAKLSVRFPTLPVDVAAPYWVVDTDYDNYAVVWSC-YEFGIF 121
G +I+GEAT V ++ AKL V+F +APYW++ TDY+NYA+V+SC +F
Sbjct: 84 DGTVNQIEGEATPVNLTEPAKLEVKFSWFM--PSAPYWILATDYENYALVYSCTCIIQLF 141
Query: 122 HTVNSWILTRQQNPPKSVLDAAYDAIDKNRISRKFFLKTDQSDC 165
H +WIL R N P +D+ + + N I K TDQ +C
Sbjct: 142 HVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNC 185
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 135 bits (326), Expect = 8e-32
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 3 GQCPDVKAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNKQIDIF 62
G+CP+ ENFD +YLG+WYE EK FE G+C+ A+Y L ++G I+VLN+++
Sbjct: 26 GKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA- 83
Query: 63 SGIQKEIKGEATQVGRSDEAKLSVRFPTLPVDVAAPYWVVDTDYDNYAVVWSC-YEFGIF 121
G +I+GEAT V ++ AKL V+F +APYW++ TDY+NYA+V+SC +F
Sbjct: 84 DGTVNQIEGEATPVNLTEPAKLEVKFSWFM--PSAPYWILATDYENYALVYSCTCIIQLF 141
Query: 122 HTVNSWILTRQQNPPKSVLDAAYDAIDKNRISRKFFLKTDQSDC 165
H +WIL R N P +D+ + + N I K TDQ +C
Sbjct: 142 HVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNC 185
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 135 bits (326), Expect = 8e-32
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 3 GQCPDVKAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNKQIDIF 62
G+CP+ ENFD +YLG+WYE EK FE G+C+ A+Y L ++G I+VLN+++
Sbjct: 26 GKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA- 83
Query: 63 SGIQKEIKGEATQVGRSDEAKLSVRFPTLPVDVAAPYWVVDTDYDNYAVVWSC-YEFGIF 121
G +I+GEAT V ++ AKL V+F +APYW++ TDY+NYA+V+SC +F
Sbjct: 84 DGTVNQIEGEATPVNLTEPAKLEVKFSWFM--PSAPYWILATDYENYALVYSCTCIIQLF 141
Query: 122 HTVNSWILTRQQNPPKSVLDAAYDAIDKNRISRKFFLKTDQSDC 165
H +WIL R N P +D+ + + N I K TDQ +C
Sbjct: 142 HVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNC 185
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 135 bits (326), Expect = 8e-32
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 3 GQCPDVKAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNKQIDIF 62
G+CP+ ENFD +YLG+WYE EK FE G+C+ A+Y L ++G I+VLN+++
Sbjct: 26 GKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA- 83
Query: 63 SGIQKEIKGEATQVGRSDEAKLSVRFPTLPVDVAAPYWVVDTDYDNYAVVWSC-YEFGIF 121
G +I+GEAT V ++ AKL V+F +APYW++ TDY+NYA+V+SC +F
Sbjct: 84 DGTVNQIEGEATPVNLTEPAKLEVKFSWFM--PSAPYWILATDYENYALVYSCTCIIQLF 141
Query: 122 HTVNSWILTRQQNPPKSVLDAAYDAIDKNRISRKFFLKTDQSDC 165
H +WIL R N P +D+ + + N I K TDQ +C
Sbjct: 142 HVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNC 185
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 135 bits (326), Expect = 8e-32
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 3 GQCPDVKAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNKQIDIF 62
G+CP+ ENFD +YLG+WYE EK FE G+C+ A+Y L ++G I+VLN+++
Sbjct: 26 GKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA- 83
Query: 63 SGIQKEIKGEATQVGRSDEAKLSVRFPTLPVDVAAPYWVVDTDYDNYAVVWSC-YEFGIF 121
G +I+GEAT V ++ AKL V+F +APYW++ TDY+NYA+V+SC +F
Sbjct: 84 DGTVNQIEGEATPVNLTEPAKLEVKFSWFM--PSAPYWILATDYENYALVYSCTCIIQLF 141
Query: 122 HTVNSWILTRQQNPPKSVLDAAYDAIDKNRISRKFFLKTDQSDC 165
H +WIL R N P +D+ + + N I K TDQ +C
Sbjct: 142 HVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNC 185
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 135 bits (326), Expect = 8e-32
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Query: 3 GQCPDVKAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNKQIDIF 62
G+CP+ ENFD +YLG+WYE EK FE G+C+ A+Y L ++G I+VLN+++
Sbjct: 26 GKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRA- 83
Query: 63 SGIQKEIKGEATQVGRSDEAKLSVRFPTLPVDVAAPYWVVDTDYDNYAVVWSC-YEFGIF 121
G +I+GEAT V ++ AKL V+F +APYW++ TDY+NYA+V+SC +F
Sbjct: 84 DGTVNQIEGEATPVNLTEPAKLEVKFSWFM--PSAPYWILATDYENYALVYSCTCIIQLF 141
Query: 122 HTVNSWILTRQQNPPKSVLDAAYDAIDKNRISRKFFLKTDQSDC 165
H +WIL R N P +D+ + + N I K TDQ +C
Sbjct: 142 HVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNC 185
>S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein.
Length = 98
Score = 75.8 bits (178), Expect = 7e-14
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 71 GEATQVGRSDEAKLSVRFPTLPVDVAAPYWVVDTDYDNYAVVWSC-YEFGIFHTVNSWIL 129
GEAT V ++ AKL V+F +APYW++ TDY+NYA+V+SC +FH +WIL
Sbjct: 1 GEATPVNLTEPAKLEVKFSWFMP--SAPYWILATDYENYALVYSCTCIIQLFHVDFAWIL 58
Query: 130 TRQQNPPKSVLDAAYDAIDKNRISRKFFLKTDQSDC 165
R N P +D+ + + N I K TDQ +C
Sbjct: 59 ARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNC 94
>X00129-1|CAA24959.1| 199|Homo sapiens protein ( Human mRNA for
retinol binding protein (RBP). ).
Length = 199
Score = 46.0 bits (104), Expect = 7e-05
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 9 KAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNK-QIDIFSGIQK 67
+ ENFD AR+ G WY K F + A++ + + G + K ++ + +
Sbjct: 26 RVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDV 85
Query: 68 EIKGEATQVGRSDEAKLSVRFPTLPVDVAA---PYWVVDTDYDNYAVVWSCYEFGIFHTV 124
T D AK +++ + + +W+VDTDYD YAV +SC + T
Sbjct: 86 CADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTC 145
Query: 125 ---NSWILTRQQN--PPKS 138
S++ +R N PP++
Sbjct: 146 ADSYSFVFSRDPNGLPPEA 164
>BC020633-1|AAH20633.1| 201|Homo sapiens retinol binding protein 4,
plasma protein.
Length = 201
Score = 46.0 bits (104), Expect = 7e-05
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 9 KAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNK-QIDIFSGIQK 67
+ ENFD AR+ G WY K F + A++ + + G + K ++ + +
Sbjct: 28 RVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDV 87
Query: 68 EIKGEATQVGRSDEAKLSVRFPTLPVDVAA---PYWVVDTDYDNYAVVWSCYEFGIFHTV 124
T D AK +++ + + +W+VDTDYD YAV +SC + T
Sbjct: 88 CADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTC 147
Query: 125 ---NSWILTRQQN--PPKS 138
S++ +R N PP++
Sbjct: 148 ADSYSFVFSRDPNGLPPEA 166
>AL356214-6|CAH72329.1| 199|Homo sapiens retinol binding protein 4,
plasma protein.
Length = 199
Score = 46.0 bits (104), Expect = 7e-05
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 9 KAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNK-QIDIFSGIQK 67
+ ENFD AR+ G WY K F + A++ + + G + K ++ + +
Sbjct: 26 RVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDV 85
Query: 68 EIKGEATQVGRSDEAKLSVRFPTLPVDVAA---PYWVVDTDYDNYAVVWSCYEFGIFHTV 124
T D AK +++ + + +W+VDTDYD YAV +SC + T
Sbjct: 86 CADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTC 145
Query: 125 ---NSWILTRQQN--PPKS 138
S++ +R N PP++
Sbjct: 146 ADSYSFVFSRDPNGLPPEA 164
>AL356214-5|CAH72328.1| 201|Homo sapiens retinol binding protein 4,
plasma protein.
Length = 201
Score = 46.0 bits (104), Expect = 7e-05
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 9 KAMENFDPARYLGKWYEAEKYFFLFEFGGKCVTADYKLRDDGAIRVLNK-QIDIFSGIQK 67
+ ENFD AR+ G WY K F + A++ + + G + K ++ + +
Sbjct: 28 RVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDV 87
Query: 68 EIKGEATQVGRSDEAKLSVRFPTLPVDVAA---PYWVVDTDYDNYAVVWSCYEFGIFHTV 124
T D AK +++ + + +W+VDTDYD YAV +SC + T
Sbjct: 88 CADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLLNLDGTC 147
Query: 125 ---NSWILTRQQN--PPKS 138
S++ +R N PP++
Sbjct: 148 ADSYSFVFSRDPNGLPPEA 166
>X02824-1|CAB46489.1| 70|Homo sapiens protein ( Human gene
fragment for retinol binding protein (RBP) (exon 5). ).
Length = 70
Score = 35.9 bits (79), Expect = 0.071
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 99 YWVVDTDYDNYAVVWSCYEFGIFHTV---NSWILTRQQN--PPKS 138
+W+VDTDYD YAV +SC + T S++ +R N PP++
Sbjct: 3 HWIVDTDYDTYAVQYSCRLLNLDGTCADSYSFVFSRDPNGLPPEA 47
>AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of
Charlevoix-Saguenay (sacsin) protein.
Length = 4432
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 26 AEKYFFLFEFGGKCVTADYKLRDDGAIRVLNKQIDIFSGI 65
+EK FF F + +LRD I VLN+++D FSG+
Sbjct: 1905 SEKQFFSEVFFPNIQEIEAELRDPLMIFVLNEKVDEFSGV 1944
>AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein.
Length = 3829
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 26 AEKYFFLFEFGGKCVTADYKLRDDGAIRVLNKQIDIFSGI 65
+EK FF F + +LRD I VLN+++D FSG+
Sbjct: 1302 SEKQFFSEVFFPNIQEIEAELRDPLMIFVLNEKVDEFSGV 1341
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.321 0.138 0.436
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,029,743
Number of Sequences: 224733
Number of extensions: 1001714
Number of successful extensions: 1546
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 15
length of query: 170
length of database: 73,234,838
effective HSP length: 85
effective length of query: 85
effective length of database: 54,132,533
effective search space: 4601265305
effective search space used: 4601265305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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