GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002703-TA|BGIBMGA002703-PA|IPR002345|Lipocalin,
IPR011038|Calycin-like, IPR000566|Lipocalin-related protein and
Bos/Can/Equ allergen
         (257 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.68 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.68 

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 52  LTGMKRLMEGSLQMIGREGEGRFMIKYSSLPL---PYESEFSILD-TDYDNYAVMWSCSG 107
           L G+ R   G  Q I R  EG      + L L   P    +S ++ T     AV   CS 
Sbjct: 386 LNGINREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSA 445

Query: 108 IGPVHTQNTWLLTRERLPS 126
            G    Q TW L    LP+
Sbjct: 446 AGNPTPQVTWALDGFALPT 464


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 52  LTGMKRLMEGSLQMIGREGEGRFMIKYSSLPL---PYESEFSILD-TDYDNYAVMWSCSG 107
           L G+ R   G  Q I R  EG      + L L   P    +S ++ T     AV   CS 
Sbjct: 386 LNGINREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSA 445

Query: 108 IGPVHTQNTWLLTRERLPS 126
            G    Q TW L    LP+
Sbjct: 446 AGNPTPQVTWALDGFALPT 464


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,743
Number of Sequences: 429
Number of extensions: 3580
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 257
length of database: 140,377
effective HSP length: 56
effective length of query: 201
effective length of database: 116,353
effective search space: 23386953
effective search space used: 23386953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)