GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002701-TA|BGIBMGA002701-PA|undefined
         (193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   1.8  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    25   5.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.3  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   9.6  

>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 72  HNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 107
           H P +  DK+     VP +A++  + G S+P   AS
Sbjct: 65  HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
          Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 50 LRQDVNTRNLLIHHQRIKNFGYHNPRILADKST 82
          LR+   +  +L     +++FG +N RI ADK T
Sbjct: 6  LRRSFTSSRILRKVNAVESFGDYNTRISADKVT 38


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 133 AWGHTSPAWQLCTHGLLATRTQHSSSVSTH 162
           ++ ++S  +    H +L T+++HSSS S+H
Sbjct: 306 SYDNSSETFVEAIHKILDTKSKHSSSKSSH 335


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 16/47 (34%), Positives = 19/47 (40%)

Query: 107 SWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCTHGLLATRT 153
           SW Y +    L   Q F A         G +SP  QL  HG+ A  T
Sbjct: 79  SWVYASWAIGLFLYQSFDAIDGSQARRTGTSSPLGQLFDHGVDAINT 125


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.131    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 776,490
Number of Sequences: 5004
Number of extensions: 29257
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 5
length of query: 193
length of database: 2,362,478
effective HSP length: 69
effective length of query: 124
effective length of database: 2,017,202
effective search space: 250133048
effective search space used: 250133048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)