GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002701-TA|BGIBMGA002701-PA|undefined
         (193 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0705 - 20846810-20848165                                         30   1.1  
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376     28   5.6  
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    28   5.6  
11_01_0060 + 453615-454030,454086-455862                               27   7.4  

>07_03_0705 - 20846810-20848165
          Length = 451

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 76  ILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWG 135
           +LAD  +SL           +  P+ P   AS S  ++L C  +  QF+ +     NA G
Sbjct: 105 VLADTGSSLIWTQCAPCTECAARPAPPFQPASSSTFSKLPCASSLCQFLTSPYLTCNATG 164

Query: 136 --HTSPAWQLCTHGLLATRTQHSSSVS 160
             +  P     T G LAT T H    S
Sbjct: 165 CVYYYPYGMGFTAGYLATETLHVGGAS 191


>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
          Length = 1135

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 77   LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 108
            LAD     T  P+  SI  AST PSQ  H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068


>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 94  AASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQ 142
           A+STG  +P    +W+ G++   L     F AA+  ++  + +    WQ
Sbjct: 26  ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74


>11_01_0060 + 453615-454030,454086-455862
          Length = 730

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 50  LRQDVNTRNLLIHHQRIKNFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWS 109
           + +D+   N ++    +  FG+H  R +     S     +   I+A    S     A W 
Sbjct: 139 MNKDLTCWNAMLEGYVLNGFGHHAIRTVLLMHHSGLAPDRYTYISAVKACSIS---AQWD 195

Query: 110 YGTQLHCLI 118
            G QLHCL+
Sbjct: 196 LGRQLHCLV 204


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.131    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,040,872
Number of Sequences: 37544
Number of extensions: 189802
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 4
length of query: 193
length of database: 14,793,348
effective HSP length: 78
effective length of query: 115
effective length of database: 11,864,916
effective search space: 1364465340
effective search space used: 1364465340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)