Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002701-TA|BGIBMGA002701-PA|undefined
(193 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_24453| Best HMM Match : Rho_N (HMM E-Value=4.8) 29 1.9
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 29 2.5
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 28 4.4
SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037) 27 7.6
SB_27693| Best HMM Match : Kringle (HMM E-Value=8.4) 27 7.6
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 27 7.6
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 135 GHTSPAWQLCTHGLL 149
GHT P W LC HG L
Sbjct: 458 GHTGPVWALCVHGEL 472
>SB_24453| Best HMM Match : Rho_N (HMM E-Value=4.8)
Length = 423
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 46 QTGDLRQDVNTRNLLIHHQRIKNFGYHNPRILADKSTSLTVVPQQASIAASTGPS 100
+ G LR D L H+ +KNFG L ++ +V + A + AS GP+
Sbjct: 284 ENGLLRLDAGRLKYLAHNIGLKNFGRLGKTRLVERIIEGSVRSRDAHVLASFGPA 338
>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 50 LRQDVNTRNLLI--HHQR----IKNFGYHNPRILA-DKSTSLTVVPQQASIAASTGPSQP 102
L+ D NT + I +H + + NF +PR +A D S+++ V P S + S P
Sbjct: 445 LKTDQNTLQIHIGGNHNKSDNSVSNFSISSPRTVALDSSSTMNVSPNSDSSSRQPVASDP 504
Query: 103 THR 105
HR
Sbjct: 505 NHR 507
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 132 NAWG-HTSPAWQLCTHGLLATRTQHSSSV 159
NA+G HT P QLC G L R + SSSV
Sbjct: 858 NAFGTHTCPGEQLCLVGQLGHRARWSSSV 886
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 88 PQQASIAASTGPSQPTH 104
PQ AS+ S G SQPTH
Sbjct: 548 PQHASVGTSMGQSQPTH 564
>SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 37 KIFPFVVYTQTGDLRQDVNTRNLLIHHQRIKNFGYHNPRILADKSTSLTVVPQQASIAAS 96
KIF + + G L Q V + N + KN H + ++ + A
Sbjct: 4 KIFRMITHIN-GTLGQQVESVNSRLDRLS-KNVTDHASALNGVVYRAIKKMKTVAKGTNI 61
Query: 97 TGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINA 133
TG S P+ + Y TQ+ L T Q + AH NA
Sbjct: 62 TGSSTPSVSGNTDYSTQIKNLTTELQHLGAHMNFHNA 98
>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 132 NAWG-HTSPAWQLCTHGLLATRTQHSSSV 159
+A+G HTSP QLC G L R + SSSV
Sbjct: 305 HAFGTHTSPGKQLCLVGQLGYRGRWSSSV 333
>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
Length = 1235
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 97 TGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCTHGLLATRTQHS 156
T P P R+++ + + T + H R +A+GH S + + LAT+T+HS
Sbjct: 662 TSPGHP--RSAYGHPSDSQFQETGVKTSPGHPR--SAFGHPSDSQFQESDSKLATKTKHS 717
Query: 157 SSVSTH 162
SV H
Sbjct: 718 MSVHGH 723
>SB_27693| Best HMM Match : Kringle (HMM E-Value=8.4)
Length = 146
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 136 HTSPAWQLCTHGLLATRTQHSSSV 159
HTSP QLC G L R + SSSV
Sbjct: 19 HTSPGKQLCFVGQLGYRGRWSSSV 42
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 91 ASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRI--INAWGHTSPAWQLCTHGL 148
A I +ST + TH + T H L TP+ H + H + CTH L
Sbjct: 721 APITSSTPQTTSTHHITTPQTTCTHHLTTPETTSTHHISAPQTTSTHHITTPQTTCTHHL 780
Query: 149 LATRTQHSSSVST 161
T + +ST
Sbjct: 781 TTPETTCTHHIST 793
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.131 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,901,312
Number of Sequences: 59808
Number of extensions: 224750
Number of successful extensions: 428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 12
length of query: 193
length of database: 16,821,457
effective HSP length: 78
effective length of query: 115
effective length of database: 12,156,433
effective search space: 1397989795
effective search space used: 1397989795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)
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