GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002701-TA|BGIBMGA002701-PA|undefined
         (193 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   2.6  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   6.0  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   7.9  
AJ010904-1|CAA09390.1|  142|Anopheles gambiae nitric oxide synth...    23   7.9  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 94  AASTGPSQPTHR 105
           AA+TGP  PTHR
Sbjct: 913 AAATGPPPPTHR 924


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein
          protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 68 NFGYHNPRILADKSTSLTVVPQQASIAASTGP 99
          NF Y    +L+D+ T L    +QA +   TGP
Sbjct: 40 NFFYAIQFVLSDEFTHLRPEQRQALLHEGTGP 71


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 119 TPQQFIAAHDRII-NAWGHTSPAWQLCTHGLLATRTQHSSSVST 161
           TP   IA  DRI+ N  G+++ A+ +CT  L   R   + + ST
Sbjct: 60  TPVATIAEMDRIMGNIAGNSTEAF-ICTPVLSRQRATRAPTTST 102


>AJ010904-1|CAA09390.1|  142|Anopheles gambiae nitric oxide synthase
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 10  QDKAHIYKFRTITPGPSVYRAI 31
           Q+KAHIY    +T    VY+ +
Sbjct: 87  QEKAHIYVCGDVTMAEHVYQTL 108


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.131    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,278
Number of Sequences: 2123
Number of extensions: 6654
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 193
length of database: 516,269
effective HSP length: 61
effective length of query: 132
effective length of database: 386,766
effective search space: 51053112
effective search space used: 51053112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)