GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002701-TA|BGIBMGA002701-PA|undefined
         (193 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    30   1.2  
U23172-2|AAM22069.2|  538|Caenorhabditis elegans Ubiquitin prote...    29   2.1  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    27   6.5  
AF038619-3|AAO91713.1|  126|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 88  PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 145
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 15  PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 72


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 88  PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 145
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 177


>U23172-2|AAM22069.2|  538|Caenorhabditis elegans Ubiquitin protein
           1, isoform c protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 25  PSVYRAISSARWKIFPFVVYTQTGDLRQDVNTRNLLIHHQRIKNFGYH 72
           P   R I +  +  F      +  DLRQD + +N   HH R ++FG+H
Sbjct: 494 PDQQRLIFAGVYSSFGAPSQRRYADLRQDFDWKN---HHSRGRSFGHH 538


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 68  NFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASW 108
           +FG+H P +  D+ T   VV ++A + A+ G      +  W
Sbjct: 188 SFGFHLPHVSEDR-TKTGVVEREAKLIAANGKFHSVPKRRW 227


>AF038619-3|AAO91713.1|  126|Caenorhabditis elegans Hypothetical
           protein F56A11.7 protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 83  SLTVVPQQASIAASTGPSQPTHRASWSYGTQLH 115
           +LT V Q   +++  G ++  HR  WS GTQLH
Sbjct: 54  TLTCVLQDLYLSSCHG-NEYGHRDLWSVGTQLH 85


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.131    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,200,703
Number of Sequences: 27539
Number of extensions: 159441
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 5
length of query: 193
length of database: 12,573,161
effective HSP length: 78
effective length of query: 115
effective length of database: 10,425,119
effective search space: 1198888685
effective search space used: 1198888685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)