GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002698-TA|BGIBMGA002698-PA|IPR002018|Carboxylesterase,
type B
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886...    39   0.011
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419...    36   0.076
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228...    32   1.6  
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284...    32   1.6  
05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749...    31   3.8  
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984...    30   6.6  
12_02_0403 - 18627246-18627557,18627904-18628836                       29   8.8  

>01_06_0036 +
           25786530-25786756,25788000-25788076,25788538-25788625,
           25788706-25788786,25788866-25788940,25789048-25789149,
           25789589-25789726,25791559-25791585,25791696-25791786,
           25792423-25792584
          Length = 355

 Score = 39.1 bits (87), Expect = 0.011
 Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 21/186 (11%)

Query: 99  VDVLTPNLDAAAQLPVMVWVKGKEFDSEYNQDFSF--RNFVQKDVVVVSINFRESILGFL 156
           +D+  P  D     PV+ +V G  +   Y    S   R   ++ ++V  I++R    G  
Sbjct: 132 LDLYIPK-DINRPCPVVAFVTGGAWIIGYKAWGSLLGRRLAERGIIVACIDYRNFPQG-- 188

Query: 157 CLGTEVAPGNAGLKDIIAGLKWVKENIAHFGGNPDDVTLFGHGSGAAAVDLVTLSPLANG 216
            +G  V+       D   G+ +V  NIA +GG+P+ + L G  +GA           A  
Sbjct: 189 TIGDMVS-------DASQGISYVCNNIASYGGDPNRIYLVGQSAGAHIA--------ACA 233

Query: 217 LVHKAIAQSGNAFAPWAVTRDNLNYAIQVAEALGHIVTNIQELSEIFTRTSVAALMAVIN 276
           L+ +A+ +S      W+VT+    + +     +G     +Q  +++  +    A + +  
Sbjct: 234 LIEQAVKESSGQSISWSVTQIKAYFGLS-GGYIGSCCHVLQTFADVLQQAGAQAKLQLYE 292

Query: 277 ELDLTD 282
               TD
Sbjct: 293 GKTHTD 298


>06_03_1338 -
           29440373-29440534,29440993-29441083,29441799-29441942,
           29442094-29442159,29442589-29442729,29443077-29443178,
           29443264-29443338,29443469-29443549,29443670-29443739,
           29444063-29444139,29444392-29444660
          Length = 425

 Score = 36.3 bits (80), Expect = 0.076
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 169 LKDIIAGLKWVKENIAHFGGNPDDVTLFGHGSGAAAVDLVTLSPLANGLVHKAIAQSGNA 228
           ++D   G+ +V  NIA +GG+P+ + L G  +GA           A  L+H+AI +SG  
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAGAHIA--------ACTLLHQAIKESGEG 253

Query: 229 FA-PWAVTRDNLNYAIQVAEALGHIVTNIQE 258
            A  W++ +    + I     L ++V +  +
Sbjct: 254 DASTWSIAQLKAYFGISGGYNLLNLVDHFHK 284


>10_08_0824 +
           20821724-20822137,20822457-20822543,20822729-20822829,
           20822917-20822967,20823616-20823790,20823878-20824192,
           20824504-20824707,20824799-20825314,20825400-20825609,
           20826092-20826280,20827254-20827405,20827685-20827837,
           20827925-20828006,20828086-20828475
          Length = 1012

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 446 EELAYMFYEKSDDNIPLLDLTIGDILVERWTNFAKTGAPVSETSQVVWRPFTTENN-HYL 504
           E  A +    SDD+  LL   I D LV+      +T +  ++TS   +   +  N+ + +
Sbjct: 541 ETKAALENSSSDDDSQLLTRII-DNLVDESHESNQTYSDSNDTSLYNYPSLSDWNDLNEV 599

Query: 505 RILDDSEVRGDQETT---LELDLQNPYPETLLFWEEIYNEHFLDARGKWELSERTEG 558
            I +D E R  +E +   L   +       LL W+E+Y       R K E +ER EG
Sbjct: 600 EIFEDIERREIEEASFSPLPFPIDERVERPLLSWDEVYKNARKSERLKPEGNERDEG 656


>05_07_0228 -
           28526885-28527046,28527151-28527241,28528315-28528455,
           28528560-28528625,28529180-28529317,28529759-28529860,
           28530156-28530236,28530314-28530383,28530598-28530674,
           28531035-28531483
          Length = 458

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 169 LKDIIAGLKWVKENIAHFGGNPDDVTLFGHGSGAAAVDLVTLSPLANGLVHKAIAQSGNA 228
           + D   G+ +V E +  +GG+P+ + L G  +GA           A  L+ +A  +S   
Sbjct: 237 VSDASDGISFVCETVGAYGGDPNQIYLMGQSAGAHIA--------ACALLEQAAKESRGE 288

Query: 229 FAPWAVTRDNLNYAIQVAEALGHIVTNIQE 258
              W+VT+    + +     + ++V +  E
Sbjct: 289 QISWSVTQIKAYFGLSGGYNIENLVDHFHE 318


>05_04_0268 -
           19574540-19574582,19574664-19574755,19574843-19574920,
           19575095-19575232,19575478-19575606,19575889-19576018,
           19576171-19576348,19576715-19576853,19577031-19577120,
           19577260-19577421,19577556-19577720,19577909-19578046,
           19578657-19578836,19579129-19579257,19579442-19579677,
           19579795-19579957,19580030-19580070,19580162-19580489,
           19581416-19581553,19581670-19581873
          Length = 966

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 167 AGL-KDIIAGLKWVKENIAHFGGNPDDVTLFGHGSGAAA-----VDLVTLSPLANGLVHK 220
           AGL ++I+ GL+WV+E +A   G+P    L    SGAA      +D V    L + +   
Sbjct: 31  AGLWEEIVEGLQWVEEYMAARLGDPARPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAG 90

Query: 221 AIAQSGNAFA 230
             A+SG+ FA
Sbjct: 91  LAAKSGDRFA 100


>04_04_0850 -
           28697462-28697684,28697894-28697971,28698103-28698495,
           28698590-28698893,28698978-28699188,28699943-28700674
          Length = 646

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 190 PDDVTLFGHGSGAAAVDLVTLSPLANGLVHKAIAQSGNAFAPW 232
           P   T+F HG+GA   D+  + PL +G +  A+  +G   A W
Sbjct: 207 PGGGTMFPHGAGAYIDDIGKIIPLHDGSIRTAL-DTGCGVASW 248


>12_02_0403 - 18627246-18627557,18627904-18628836
          Length = 414

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 180 KENIAHF---GGNPDDVTLFGHGSGAAAVDLVTLSPLANGLVHKAIAQSGNAFAPW 232
           K  I HF   GG  DDVTL G  S AAA    +      G+V+  +   G+  A W
Sbjct: 167 KYKIVHFPSNGGRVDDVTLGGTTSAAAAAAASSFPSRHGGVVN--VLTLGDGAASW 220


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,389
Number of Sequences: 37544
Number of extensions: 792336
Number of successful extensions: 1836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1833
Number of HSP's gapped (non-prelim): 7
length of query: 650
length of database: 14,793,348
effective HSP length: 87
effective length of query: 563
effective length of database: 11,527,020
effective search space: 6489712260
effective search space used: 6489712260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)