Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002697-TA|BGIBMGA002697-PA|undefined
         (562 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    28   0.24 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   3.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   5.1  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 328 TTSKRAVLHISNECFVPFGVTIG---FPNNSLYTAKLNNDLRRMVQSGIVDKIVDEVRWE 384
           T    A L     C+ P G  +G     +   Y      D  R VQ G      DEV   
Sbjct: 129 TNESHACLSTGGSCYWPRGKNLGGTTLHHGMAYHRGHRKDYERWVQQGAFGWSWDEVMPY 188

Query: 385 MQRSSNGKLLSAVG 398
             +S N   LS VG
Sbjct: 189 YLKSENNTELSRVG 202


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 468 PPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEE--SIEIHKQFTSEWDS 522
           PP  ++D++ E  + ++ C   +  GS  S D  +  V  +    +++K++    +S
Sbjct: 63  PPFRAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNS 119


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 277 DPNTNKLLKKLELVPNV 293
           D NT+KLLK++E+  N+
Sbjct: 162 DLNTSKLLKQIEIPHNI 178


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,550
Number of Sequences: 429
Number of extensions: 6790
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 562
length of database: 140,377
effective HSP length: 61
effective length of query: 501
effective length of database: 114,208
effective search space: 57218208
effective search space used: 57218208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)