GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002697-TA|BGIBMGA002697-PA|undefined
         (562 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.35 
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    24   2.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   5.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   5.6  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   7.4  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   9.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.1 bits (57), Expect = 0.35
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 468 PPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEESIEIHKQFTSEWDSRRSSS 527
           PP  ++D++ E  + ++ C    S GS  S D  +  V  +  E   +  SE+  R +++
Sbjct: 83  PPFRAEDYRQEVHAQVYVCLAKNSVGSVHSRDVNVRAVVNQYYE--AEVVSEYVIRGNTA 140

Query: 528 V 528
           V
Sbjct: 141 V 141


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 234 LMSTALPRYQAILGPFHWHVWVA 256
           LM+TA+ R+QAI  P  +  W +
Sbjct: 131 LMATAIDRHQAICYPLTYCSWTS 153


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 14/66 (21%), Positives = 30/66 (45%)

Query: 471 DSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEESIEIHKQFTSEWDSRRSSSVDL 530
           D+     + ES+    + ++  G ++       +V+EE++    Q  +E     + + DL
Sbjct: 90  DTSQVDDQNESLEASVNENSKNGDDDEGHEWQADVSEEAVRARMQDLTEGAKNMTINDDL 149

Query: 531 EKEVKE 536
           EK  K+
Sbjct: 150 EKREKD 155


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 270 RWFLNSSDPNTNKLLKKLELVPNVEAGIMNT-TKAFFWPYAFLGSKAELEYI 320
           R  L++   N   L+++ E +  +    +N    AF WP AFL   A L+++
Sbjct: 183 RVILDNMSRNHLFLVRRTETLAQILNQTVNFYNSAFGWPIAFLIFFATLDFL 234


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 77  IESPYILYTHKLYTDGLGASKPVVLNSWSHGKFSRNVN 114
           +E P + Y   +++  L   K ++  +WS     +N++
Sbjct: 304 LEKPIVFYVANIFSLDLDTFKKIMQKAWSFFTALKNMH 341


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 284 LKKLELVPNVEAGIMNTTKAFFWPYAFLGSKAELEYIVQSNFTKTTSKRAVLHISNECFV 343
           L+ + L+ N E     +    F  Y F+ S    +Y VQ N  +    + + H+S   F 
Sbjct: 116 LQNVSLIINYENQRTRSRIHLFVRYVFVTSYLLFDYFVQRN-QEYKYYQILSHLSGIFFT 174

Query: 344 PFGV 347
            F V
Sbjct: 175 VFNV 178


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,134
Number of Sequences: 317
Number of extensions: 5038
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 562
length of database: 114,650
effective HSP length: 60
effective length of query: 502
effective length of database: 95,630
effective search space: 48006260
effective search space used: 48006260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)