Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002697-TA|BGIBMGA002697-PA|undefined
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.14
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 31 0.43
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 31 0.56
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.56
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 31 0.56
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 29 1.3
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 29 1.7
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 29 1.7
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 28 3.0
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 28 3.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 5.2
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 27 9.2
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 9.2
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 9.2
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 32.7 bits (71), Expect = 0.14
Identities = 22/112 (19%), Positives = 49/112 (43%)
Query: 449 RKKKNTLVNSSTKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEE 508
++KK+ S+ E ++S+ +E+ES S+S S+ + ++I TEE
Sbjct: 73 KQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEE 132
Query: 509 SIEIHKQFTSEWDSRRSSSVDLEKEVKEIFERDLRRRGAALSTASNNAFGDA 560
E + +S +S ++ E K+ D ++ + S ++ ++
Sbjct: 133 KKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSES 184
Score = 29.9 bits (64), Expect = 0.98
Identities = 22/106 (20%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 451 KKNTLVNSSTKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEESI 510
KK+ +K+ + ++S+ +E+ES S S+S S S + +EE +
Sbjct: 68 KKSVKKQKKSKKKEESSSESESESSSSESESSSSE-SESSSSESESSSSESSSSESEEEV 126
Query: 511 EIHKQFTSEWDSRRSSSVDLEKEVKEIFERDLRRRGAALSTASNNA 556
+ + E S SSS + E+E + + + + ++ ++ S++ +++
Sbjct: 127 IVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSS 172
Score = 28.3 bits (60), Expect = 3.0
Identities = 22/110 (20%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 458 SSTKEDSINMPPTDSKDFKTE----TESVLHFCSRSTSPGSNESLDGQIINVTEE---SI 510
SS+ E + + S + + E TE S S+S +E + ++ + E+ S
Sbjct: 105 SSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSS 164
Query: 511 EIHKQFTSEWDSRRSSSVDLEKEVKEIFERDLRRRGAALSTASNNAFGDA 560
+ + +S SSS + E+E + + + + ++ G++ S++ + + D+
Sbjct: 165 DSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDS 214
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.43
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 481 SVLHFCSRSTSPGSNESLDGQIINVTEESI--EIHKQFTSEWDSRRSSSVDLEKEVKEIF 538
S+L C SP E ++ + IN S+ E K+F ++D + L ++ E F
Sbjct: 175 SILGNCIMKNSPMPAEPINKENINQLSRSLFYEEGKEFWDDYDIAAKEILSLYEQDPEGF 234
Query: 539 ERDLRRRGAALSTASNNAFG 558
+RGAA S N G
Sbjct: 235 VNPYSKRGAAALANSENNKG 254
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 30.7 bits (66), Expect = 0.56
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 452 KNTLVNSSTKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEESIE 511
+N N K + +MP +S K E + +S +N+S IN S
Sbjct: 392 ENGSTNLPQKTSNSDMPTANSMPVKLENGTDYSTSQEPSSNANNQSSPTSSINGKASSES 451
Query: 512 IHKQFTSEWDSRRSSSVDLEKEVKEIFERDLRRRGAAL 549
+ S+ SRR+S + ++E ++ F R R AAL
Sbjct: 452 ANGTSYSKGSSRRNSKNETDEEKRKSFLE--RNRQAAL 487
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 30.7 bits (66), Expect = 0.56
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 453 NTLVNSSTKEDSINMPPTDSK-DFKTETESVLHFCSRSTSPGSNES 497
N V SSTKE+S N P T+++ + K E S STS +N S
Sbjct: 22 NEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNAS 67
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 30.7 bits (66), Expect = 0.56
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 487 SRSTSPGSNESLDGQIINVTEESIEIHKQFTSEWDSRRSSSVDLEKEVKEIFERDLRRRG 546
S+ST+ + N + + E KQ TS++ SR++ + L K K I E DL+ R
Sbjct: 61 SKSTAASPPYVIPSTSSNADDANKEPEKQSTSDYVSRKNRHMQLIK--KNILEHDLQARK 118
Query: 547 AALST 551
A L +
Sbjct: 119 ANLES 123
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 529 DLEKEVKEIFERDLRRRGAALSTASNNAFGDAVK 562
+ + + KE+ E+ L ++G +LS +NAF D+ K
Sbjct: 724 ECQNKQKELIEKSLMQKGRSLSPKKSNAFFDSKK 757
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 29.1 bits (62), Expect = 1.7
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 449 RKKKNTLVNSSTKEDSI--NMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVT 506
+KKKNT + S++ DS+ N DS ++E E F ++ ES + + N
Sbjct: 38 KKKKNTTSSGSSESDSMSQNDKKKDSSLNESEDEDFAGFGESASENDELESAESEAENDE 97
Query: 507 EESIEIHKQFTSEWDSRRSSSVDLEKEVKEIFERDLRRR 545
E S + K + E ++R K +K + L+ +
Sbjct: 98 ESSSQ--KSNSKESHAQRKKLQKERKAMKPFADTSLKAK 134
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 136 QPPFVFRRIKSDLDGGNPRVVWDGIEIRLLH 166
QP R+K DL GNP+ +WD I R+L+
Sbjct: 402 QPKEAILRMKQDLSDGNPQ-MWDLIAYRVLN 431
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 471 DSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEESIEIHKQ 515
D DFK E + S+ PGSN + +NV + +I+ H +
Sbjct: 514 DGNDFKFEPPTGAGLPSKGYDPGSNTYVAPSSVNVKDVAIDPHSK 558
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 451 KKNTLVNSSTKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEESI 510
K+N L + ++ + TDS D E++S S + E+ D ++ N+ +
Sbjct: 174 KENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDHDDGENSDSKLDNLRNYIV 233
Query: 511 EIH-KQFTSEWDSRRSSSVDLEKEVKEI 537
++ K+ E D+ S D ++EI
Sbjct: 234 SLNQKRKKDEADAESVLSSDDNDSIEEI 261
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 494 SNESLDGQIINVTEESIEIHKQFTSEWDSRRSSSVDLEKEVKEIFERDL 542
SN+ D + + ES+E K W S V+L+ K +R L
Sbjct: 561 SNDQKDDNVSEIPTESLEYKKLRCLRWKSLTEQVVELQPSCKSSSQRHL 609
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 501 QIINVTEESIEIHKQFTSEWDSRRSSSVDLEKEVKEIFERDLRRRGA 547
++ + + E + + +QFT+E + + L K+V FE+ R GA
Sbjct: 483 ELSDASAEPVVVDQQFTTEHFDEGNIAPTLSKKVSSTFEQYQRAAGA 529
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 443 SKLCRFRKKKNTLVNSSTKEDS-INMPPTDSKDFKTETESVLHFCSRSTS 491
SKL + K+K +TK+D+ +N K K ET L S+ +S
Sbjct: 38 SKLTKLGKQKQRQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSS 87
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 23 VSAKVLGKQSESKVVVVARSSQWA 46
VSA++LG +SESK V + R WA
Sbjct: 573 VSARLLGAKSESKGVPLDRPFGWA 596
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,268
Number of Sequences: 5004
Number of extensions: 106735
Number of successful extensions: 298
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 16
length of query: 562
length of database: 2,362,478
effective HSP length: 76
effective length of query: 486
effective length of database: 1,982,174
effective search space: 963336564
effective search space used: 963336564
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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