Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002697-TA|BGIBMGA002697-PA|undefined
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0026 + 190568-190829,192475-194534,194620-195168 34 0.34
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339... 30 4.2
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 30 5.6
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 29 7.4
05_05_0214 + 23319507-23321540 29 7.4
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 29 9.8
07_01_0278 + 2039873-2039896,2040342-2040407,2040842-2040903,204... 29 9.8
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 29 9.8
01_06_1261 - 35826513-35828941,35829201-35829294 29 9.8
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 33.9 bits (74), Expect = 0.34
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 192 VAKEIAKGRADIGVAGMYLTIDRTREMDVTFAHSQDCAVFITLMSTALPRYQAILGPFHW 251
+ + +A+G D V + + +RTR +D T + + V +T + A L PF
Sbjct: 533 LVQRVAEGELDAAVGDISIVTNRTRVVDFTQPYVESGLVIVTAVRERASSAWAFLKPFTR 592
Query: 252 HVWVALTLTYLF 263
+W +LF
Sbjct: 593 EMWAVTGGFFLF 604
>04_03_0870 +
20431215-20431419,20432559-20433439,20433829-20433990,
20434742-20435001,20435110-20435200,20435487-20435675
Length = 595
Score = 30.3 bits (65), Expect = 4.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 92 GLGASKPVVLNSWSHGKFSRNVNLFPPKMTG 122
G GA KPVVL K SRN N++ P G
Sbjct: 487 GGGAGKPVVLMCTDPTKSSRNPNMYQPTFAG 517
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 29.9 bits (64), Expect = 5.6
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 194 KEIAKGRADIGVAGMYLTIDRTREMDVTFAHSQDCAVFITLMSTALPRYQAILGPFHWHV 253
++++ D + + + +RTR +D T +++ + + A L PF + +
Sbjct: 537 EKVSDNHFDAAIGDIAIVTNRTRLVDFTQPYTESGLIILAPAREIESNAWAFLKPFTFQM 596
Query: 254 WVALTLTYLF 263
W L + +LF
Sbjct: 597 WSVLGVLFLF 606
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 29.5 bits (63), Expect = 7.4
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 446 CRFRKKKNTLVNSSTKEDSINMPPTDSKDFKTETESVLHFCSR--STSPGSNESLDGQII 503
C K + + ++ D D KDF + F S+ S G +L + +
Sbjct: 1016 CALASAKGRICDQRSQADFFTQ--YDQKDFLKKKSDSEQFDSKWNIASHGGQHAL--KKL 1071
Query: 504 NVTEESIEIHKQFTSEWDSRRSSSVDLEKEVKEIFERDLRRRGAALSTASNNAFGD 559
+ + I+I ++ S S+ S+ + K +K I RD R+G AL AS+ + +
Sbjct: 1072 KLMRQGIDISQE-ASPVASQMSNMANSAKIIKIITNRDRGRKGKALKMASSGGWSN 1126
>05_05_0214 + 23319507-23321540
Length = 677
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 263 FDRGGWERWFLN--SSDPNTNKLLKKLELVPN 292
+DR RWF + S+ P T ++L LELVPN
Sbjct: 300 YDRESITRWFGSGKSTCPKTGQVLANLELVPN 331
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 29.1 bits (62), Expect = 9.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 483 LHFCSRSTSPGSNESLDGQIINVTEESIEIHKQFTSEWDSRRSSSVDLEK 532
+HF SR+ + + +DG+ ++V +E K+ E R S+V +K
Sbjct: 606 VHFASRTELDNAIKEMDGETVSVARPVVENDKKRIREEVKTRRSNVSTDK 655
>07_01_0278 +
2039873-2039896,2040342-2040407,2040842-2040903,
2042839-2043067,2043787-2044014,2044177-2044469,
2044594-2044909
Length = 405
Score = 29.1 bits (62), Expect = 9.8
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 5/152 (3%)
Query: 384 EMQRSSNGKLL-SAVGGSLKVSAAEEKGLTLEDTQGMXXXXXXXXXXXXXXXXSEWIGGF 442
+M RS GK +AV V AEEK M E +
Sbjct: 233 QMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALV 292
Query: 443 SKLCRFRKKKNTLVNSSTKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQI 502
L + ++T +E S + T SK E ++V C T P + I
Sbjct: 293 DALQLQIRSQDTSTKQVCEERS-ELCSTSSKHVDMEDDNVDKACLSDTDP---IPITENI 348
Query: 503 INVTEESIEIHKQFTSEWDSRRSSSVDLEKEV 534
+++ ++ ++I +EW++ SS V +EV
Sbjct: 349 VDLDDDGVDIPTIGVTEWNNPHSSEVSDVREV 380
>03_06_0448 -
34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 29.1 bits (62), Expect = 9.8
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 461 KEDSINMPPTDSKDFKTE---TESVLHFCSRSTSPGSNESLDGQIINVTEESIEI 512
KE+ + + D + +E T ++ CS +PGS + +D +IN++ +++ +
Sbjct: 766 KEEKVAIDEADEGNGTSEDVGTAALGSICSIEVAPGSKQEVDTGVINISHDAVTL 820
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 29.1 bits (62), Expect = 9.8
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 501 QIINVTEESIEIHKQFTSEWDSRRSSSVDLEKEVKEIFERDLRRRGAALSTASNNA 556
Q++ + + + E H + SE + +SSS + E+ R LRR ++L T NN+
Sbjct: 509 QLLEIEKRNREYHLEAMSEMNELKSSSATKDDEI-----RSLRRMLSSLQTKLNNS 559
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,064,195
Number of Sequences: 37544
Number of extensions: 666378
Number of successful extensions: 1431
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 10
length of query: 562
length of database: 14,793,348
effective HSP length: 86
effective length of query: 476
effective length of database: 11,564,564
effective search space: 5504732464
effective search space used: 5504732464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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