GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002697-TA|BGIBMGA002697-PA|undefined
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6)                 52   9e-07
SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)                   44   2e-04
SB_51285| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)                 36   0.086
SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)                 35   0.15 
SB_35054| Best HMM Match : Lig_chan (HMM E-Value=1.2e-32)              33   0.61 
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      33   0.61 
SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0)                    33   0.61 
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.1  
SB_16318| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.3  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              30   5.7  
SB_45261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.5  
SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)           29   7.5  
SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  
SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)               29   9.9  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  

>SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6)
          Length = 212

 Score = 52.4 bits (120), Expect = 9e-07
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 131 VAAANQPPFVFRRIKSDLDGGNPRVVWDGIEIRLLHLLAEKNNFSIEIVEPQELHLGSGD 190
           V    + PF+F + +++   G  RV+ +G  I LL  L+E   F  E+    + + G+ D
Sbjct: 71  VVTIAEAPFIFAQTQTN-GQGETRVIIEGYCIELLRKLSEMLRFKFEVYLVPDNNFGAQD 129

Query: 191 AVAKE-------IAKGRADIGVAGMYLTIDRTREMDVTFAHSQ-DCAVFITLMSTALPRY 242
            V KE       +  GRAD+ V  + ++ +R + +D T  +      V I    T     
Sbjct: 130 PVTKEWNGVVREVLNGRADLAVTSLTISPERQKVIDFTQPYMDLGLTVLIKPDPTEEKNP 189

Query: 243 QAILGPFHWHVWVAL 257
            AIL PF + +W+A+
Sbjct: 190 FAILRPFRYDLWMAI 204


>SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)
          Length = 592

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 449 RKKKNTL-VNSSTKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTE 507
           RK+K+     + TKE SI+     SK  KT+ +S  +     ++P  + S DG++     
Sbjct: 424 RKEKHERDKEAKTKERSISKERDKSKGEKTKEKSSSNHSKHKSTPSLDTSKDGEVEKANG 483

Query: 508 ESIEIHKQFT-SEWDSRRSSSVDLEKEVKEIFERDLR--RRGAALSTASN 554
             IE     T  E   RRS S++ EKE  +  ER L+  R+ A+L T  N
Sbjct: 484 PKIEYVSFCTYQESQERRSKSLEREKEKDKDKERALKAERKRASLDTLEN 533


>SB_51285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 449 RKKKNTL-VNSSTKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTE 507
           RK+K+     + TKE SI+     SK  KT+ +S  +     ++P  + S DG++     
Sbjct: 32  RKEKHERDKEAKTKERSISKERDKSKGEKTKEKSSSNHSKHKSTPSLDTSKDGEVEKANG 91

Query: 508 ESIEIHKQFT-SEWDSRRSSSVDLEKEVKEIFERDLR--RRGAALSTASN 554
             IE     T  E   RRS S++ EKE  +  ER L+  R+ A+L T  N
Sbjct: 92  PKIEYVSFCTYQESQERRSKSLEREKEKDKDKERALKAERKRASLDTLEN 141


>SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)
          Length = 315

 Score = 35.9 bits (79), Expect = 0.086
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 465 INMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEESIEI-HKQFTSEWDSR 523
           +N P   + DFKT    +LH  S +TS   + S        T E +E  H Q   E    
Sbjct: 46  VNAPLPTADDFKTTRHKLLHKQSSNTSSKGDRS--------TREKLEAEHTQVNREMVEL 97

Query: 524 RSSSVDLEKEVKEIFERDLRRRGAALS 550
           RS  +++ KE+K++ E D+ R   A S
Sbjct: 98  RSKIMNMHKEIKQL-EVDILRTEQAYS 123


>SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)
          Length = 619

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 159 GIEIRLLHLLAEKNNFSIEIVEPQELHLGSGDAVAKE-------IAKGRADIGVAGMYLT 211
           G+ I LL L+ +++ F+ E+   ++   GS D   +E       +A+G AD+ +A + +T
Sbjct: 348 GVMIDLLLLIQKQSGFTFELYLVRDGRYGSYDPELREMNGMIGDVARGTADMALATITIT 407

Query: 212 IDRTREMDVTFAHSQDCAVFI 232
            +R R +D T  ++ +   F+
Sbjct: 408 QERLRYVDFTTPYAGNSLTFL 428


>SB_35054| Best HMM Match : Lig_chan (HMM E-Value=1.2e-32)
          Length = 496

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 182 QELHLGSGDAVAKEIAKGRADIGVAGMYLTIDRTREMDVT--FAHSQDCAVFITLMSTAL 239
           QE   G  + +  E+ +G AD+ +A + +T  R+R +D T  F H    A+ + +     
Sbjct: 35  QEPGTGQWNGLIGELLRGEADVAIADLTITDARSRVVDFTHPFLH-VGMAILVAVYKNRS 93

Query: 240 PRYQAILGPFHWHVWV 255
                 L PF   +W+
Sbjct: 94  GWLVRFLEPFSTELWI 109


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 460 TKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEESIEIHKQFTSE 519
           TK+D  N  P+   D   +   VL    R   P  ++SL  + IN+   S  + +  + +
Sbjct: 627 TKQDDYNKTPSPENDPSQDNIKVL-VTRRPRRP--SDSLTNEEININATSTTVSRTISRK 683

Query: 520 WDSRRSSSVDLEKEVKEIFERDLRRRGAALSTAS 553
           +     S  D +K+VK++     RRR   LS +S
Sbjct: 684 FSD---SLTDDDKKVKDVSPTAPRRRSRKLSDSS 714


>SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 1001

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 159 GIEIRLLHLLAEKNNFSIEIVEPQELHLGSGDAVAK-------EIAKGRADIGVAGMYLT 211
           G  I LL L+ E  +F+ E    ++   GS D V         +I  G AD+ +A + +T
Sbjct: 328 GQMIELLELIREYVHFTYEFYLIRDHKYGSVDPVTGLWNGMVGDIITGEADMALATLTIT 387

Query: 212 IDRTREMDVTFAHSQDCAVFITLMSTALPRY--QAILGPFHWHVWVALTLTYLF------ 263
             R+R +D +  + +     +    T L        + P    +W  +  T LF      
Sbjct: 388 ASRSRVIDFSSPYGEVGIGILARTDTTLGSVVNMDFMIPLSSQLWTVILATILFVIIVLW 447

Query: 264 --DRGGWERWFL 273
             DR  WE W+L
Sbjct: 448 VLDRKSWE-WYL 458


>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 159 GIEIRLLHLLAEKNNFSIEIVEPQELHLGSGDAVAK-------EIAKGRADIGVAGMYLT 211
           G  + +L  L     F  EI    E   GS D   K       ++ +GRAD+ + GM  T
Sbjct: 423 GYVVDILLSLERDLRFHAEIYVRSERAYGSYDPKTKRWGGMVGDLVEGRADVALMGM--T 480

Query: 212 IDRTREMDVTFAHSQDCAVFITLMSTALPRYQAILGPFHWHVWVALTLTYLF 263
           + + R   + F  +   +  + LM  +    Q  L  +  H+ + L LT LF
Sbjct: 481 VSKVRSEAIDFTPAITPSKLVILMHASQAEVQNSLFGYLRHLNLELWLTLLF 532


>SB_16318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 450 KKKNTLVNSSTKEDSINMPPTDSKDF-KTETESVLHFCSRSTSPGSNESLDGQIINVTEE 508
           ++KN + N +T+EDS +    D+K+  KTET + +   S +     N+  D    +++EE
Sbjct: 63  REKNGIGNKATEEDSSD----DNKNGNKTETWAEIELTSTNCQSVENDGNDNVAFDISEE 118

Query: 509 SIEI 512
           S ++
Sbjct: 119 STKL 122


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 152 NPRVVWDGIEIRLLHLLAEKNNFSIEI-VEPQELH-----LGSGDAVAKEIAKGRADIGV 205
           N   V +G  I L+  +++   F+  + + P  L+     LG    +  +I KG+AD+  
Sbjct: 783 NEAGVLEGFSIDLIKEISQMLGFAYNVYLSPDGLYGGSDGLGGYTGIVGQIIKGKADLST 842

Query: 206 AGMYLTIDRTREMDVTFAHSQDCAVFITLMSTALPRY-QAILGPFHWHVWVALTLTYL 262
           + + +T +R + ++ +    Q     I+       +Y  A + P+   VW+ LTL  L
Sbjct: 843 SPLTITSERLQYLEFSKPFMQFTMSLISKKFDNDNQYLMAFMRPYSSTVWL-LTLAGL 899


>SB_45261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 491 SPGSNESLDGQIINVTEESIEIHKQFTSEWDSRRSSSVDLEKEVKEIFERD 541
           S   N +L  + +NVT+   E+HK+  ++W + R +  D   E+K + +RD
Sbjct: 9   SSKQNATLARRYLNVTQRE-EVHKKAFTKWVNSRLAQADPPIEIKNL-DRD 57


>SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)
          Length = 432

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 488 RSTSPGSNESLDGQIINVTEESIEI-HKQFTSEW-DSRRSSSVDLEKEVKEIFERDLR 543
           + TSP  + SL+  II    +S +I H QF   W D+  + S  LE+ +   F +  R
Sbjct: 309 KDTSPALSTSLERYIIRTFHQSGKIHHPQFPPVWKDTSSAISTSLERYIIRTFHQSGR 366


>SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 454 TLVNSSTKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLD 499
           TL    T  +++ +P TDS+   TET+S       S +P +N ++D
Sbjct: 309 TLTIPVTDSETLTIPVTDSETLTTETQST----DSSINPSANNTMD 350


>SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)
          Length = 103

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 277 DPNTNKLLKKLELVPNVEAGIMNTTKAFFW---PYAFLGSKAELEYIVQ 322
           +  T KL++K +  P +  GI+ TT A  W    Y   G  +   YI++
Sbjct: 21  ETETEKLIRKSKAQPFIPIGILGTTAAIVWGVIAYRHRGPMSTSRYIMR 69


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 477  TETESVLHFCSRSTSPGSNESLDGQIIN--VTEESIEIHKQFTSEWDSRRSSSVDLEKEV 534
            +E    L   S   +P S     G   N  + ++     +  T++  S R+SS+DL+K V
Sbjct: 2326 SEKVKSLFMSSTLDTPSSLSITSGSTENSILVDQGQSSKESQTTQEPSSRNSSIDLDKRV 2385

Query: 535  KEIFERDLRRRGAALSTASN 554
                E+  + R A+  +AS+
Sbjct: 2386 DVFLEKLEKERRASFRSASS 2405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,948,383
Number of Sequences: 59808
Number of extensions: 717293
Number of successful extensions: 1828
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1818
Number of HSP's gapped (non-prelim): 20
length of query: 562
length of database: 16,821,457
effective HSP length: 86
effective length of query: 476
effective length of database: 11,677,969
effective search space: 5558713244
effective search space used: 5558713244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)