GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002697-TA|BGIBMGA002697-PA|undefined
         (562 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51999-8|AAA96090.2|  465|Caenorhabditis elegans Glutamate recep...    44   2e-04
AF318611-1|AAK01099.1|  436|Caenorhabditis elegans ionotropic gl...    44   2e-04
U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate recep...    37   0.033
AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic gl...    37   0.033
Z70205-5|CAA94115.2|  528|Caenorhabditis elegans Hypothetical pr...    32   1.2  
AL033514-28|CAA22088.1|  363|Caenorhabditis elegans Hypothetical...    31   1.6  
U41547-1|AAA83192.2|  489|Caenorhabditis elegans Glutamate recep...    30   3.8  
AF318612-1|AAK01100.1|  406|Caenorhabditis elegans ionotropic gl...    30   3.8  
AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical ...    30   5.0  
Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical pr...    29   6.6  
Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical pr...    29   8.7  

>U51999-8|AAA96090.2|  465|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 7 protein.
          Length = 465

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 16/136 (11%)

Query: 136 QPPFVFRRIKSDLDGGNPRVVWDGIEIRLLHLLAEKNNFSIEIVEPQELHLGSGD----- 190
           QPPFV R        G+P   ++G  I L++++  + NF+  I E ++   G+ D     
Sbjct: 22  QPPFVQRT-------GDPDTPYEGYCIDLINMIQVEVNFTYTIYEVEDGSFGTMDDNGNW 74

Query: 191 -AVAKEIAKGRADIGVAGMYLTIDRTREMDVTFAHSQDCAVFITLMSTALPRYQ--AILG 247
             +   +  G ADI +A + +  +R  ++D T  +  D      LM  A   Y     + 
Sbjct: 75  NGLIGALVSGSADIALAPLSVMAERENDVDFTVPY-YDLVGTTILMKKADVEYSLFKFMK 133

Query: 248 PFHWHVWVALTLTYLF 263
              W VW+ +   YLF
Sbjct: 134 VLEWPVWLCIVAAYLF 149


>AF318611-1|AAK01099.1|  436|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-7 protein.
          Length = 436

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 16/136 (11%)

Query: 136 QPPFVFRRIKSDLDGGNPRVVWDGIEIRLLHLLAEKNNFSIEIVEPQELHLGSGD----- 190
           QPPFV R        G+P   ++G  I L++++  + NF+  I E ++   G+ D     
Sbjct: 6   QPPFVQRT-------GDPDTPYEGYCIDLINMIQVEVNFTYTIYEVEDGSFGTMDDNGNW 58

Query: 191 -AVAKEIAKGRADIGVAGMYLTIDRTREMDVTFAHSQDCAVFITLMSTALPRYQ--AILG 247
             +   +  G ADI +A + +  +R  ++D T  +  D      LM  A   Y     + 
Sbjct: 59  NGLIGALVSGSADIALAPLSVMAERENDVDFTVPY-YDLVGTTILMKKADVEYSLFKFMK 117

Query: 248 PFHWHVWVALTLTYLF 263
              W VW+ +   YLF
Sbjct: 118 VLEWPVWLCIVAAYLF 133


>U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 5 protein.
          Length = 932

 Score = 37.1 bits (82), Expect = 0.033
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 187 GSGDAVAKEIAKGRADIGVAGMYLTIDRTREMDVTFAH-SQDCAVFITLMSTALPRYQAI 245
           GS D +  EI +G A++ VA + +   R+  +D T    S   ++   +     P   + 
Sbjct: 502 GSWDGMMGEILRGEAEMAVAPLTVNYRRSEAVDFTKPFLSLGISILYKVPDDQQPDLFSF 561

Query: 246 LGPFHWHVWVA-----LTLT---YLFDRGGWERWFLNSSDPNTNKLLKKLELVPNVEAGI 297
           L P  W +W A     +T+T   Y         W LN S    ++         N EA I
Sbjct: 562 LNPLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLNFSCCTAHEPHPAAAFATNQEAPI 621

Query: 298 MNTTKAFFW 306
           + +    FW
Sbjct: 622 VMSNNYSFW 630


>AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-5 protein.
          Length = 425

 Score = 37.1 bits (82), Expect = 0.033
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 187 GSGDAVAKEIAKGRADIGVAGMYLTIDRTREMDVTFAH-SQDCAVFITLMSTALPRYQAI 245
           GS D +  EI +G A++ VA + +   R+  +D T    S   ++   +     P   + 
Sbjct: 62  GSWDGMMGEILRGEAEMAVAPLTVNYRRSEAVDFTKPFLSLGISILYKVPDDQQPDLFSF 121

Query: 246 LGPFHWHVWVA-----LTLT---YLFDRGGWERWFLNSSDPNTNKLLKKLELVPNVEAGI 297
           L P  W +W A     +T+T   Y         W LN S    ++         N EA I
Sbjct: 122 LNPLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLNFSCCTAHEPHPAAAFATNQEAPI 181

Query: 298 MNTTKAFFW 306
           + +    FW
Sbjct: 182 VMSNNYSFW 190


>Z70205-5|CAA94115.2|  528|Caenorhabditis elegans Hypothetical
           protein C11H1.5 protein.
          Length = 528

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 450 KKKNTLVNSSTKEDSINMPPTDSKDFK-TETESVLHFCSRSTSPGSNESLDGQIINVTEE 508
           +++ +L+NS     S N  PT  K +  + TES + F + + S  +  S    I + T  
Sbjct: 299 RQRQSLMNSGYLSPS-NTAPTVIKPYPPSSTESSIDFTTATESTSTPTSTTSDITSTTTA 357

Query: 509 SIEIHKQFTSEWDSRRSSSVDLEKEVKEIFE 539
                   T  W + R   VD      E F+
Sbjct: 358 PTSASTYSTDSWATARQELVDFTATTPEPFD 388


>AL033514-28|CAA22088.1|  363|Caenorhabditis elegans Hypothetical
           protein Y75B8A.28 protein.
          Length = 363

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 441 GFSKLCRFRKKKNTLVNSSTKEDSINMPPTDSKDFKTETESVLHF-CSRSTSP--GSNES 497
           G+S  C  + KK  L ++  + +++    TD      ETE +LHF C R   P  G N S
Sbjct: 193 GYSSKC-LKNKKLELEHNKERFENLTSEKTDIVSKNLETEKLLHFACDRVLIPFLGDNNS 251

Query: 498 LDGQI 502
            +  I
Sbjct: 252 NNSNI 256


>U41547-1|AAA83192.2|  489|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 8 protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 308 YAFLGSKAELEYIVQSNFTKTTSKRAVLHISNECFVPFGVTIGFPNNSLYTAKLNNDLRR 367
           YA LG  A L      NF   +  + +L   N+  +P  ++I    NS+Y+   +  +R 
Sbjct: 300 YALLGPMATL------NFYAYSDCKVILF--NDGILPVYLSIPLVKNSIYSPYFSTKIRE 351

Query: 368 MVQSGIVDKIVDEVR 382
           MV+ G   K + + R
Sbjct: 352 MVERGFTQKWIADYR 366


>AF318612-1|AAK01100.1|  406|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-8 protein.
          Length = 406

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 308 YAFLGSKAELEYIVQSNFTKTTSKRAVLHISNECFVPFGVTIGFPNNSLYTAKLNNDLRR 367
           YA LG  A L      NF   +  + +L   N+  +P  ++I    NS+Y+   +  +R 
Sbjct: 292 YALLGPMATL------NFYAYSDCKVILF--NDGILPVYLSIPLVKNSIYSPYFSTKIRE 343

Query: 368 MVQSGIVDKIVDEVR 382
           MV+ G   K + + R
Sbjct: 344 MVERGFTQKWIADYR 358


>AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical
           protein Y116A8C.13 protein.
          Length = 833

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 451 KKNTLVNSSTKEDSINMPPTDSKDFKTETESVLHFCSRSTSPGSNESLDGQIINVTEESI 510
           K +T  +   + D + +  TDS   K+E E  +  C  S   G ++  DG+IIN+   S+
Sbjct: 30  KASTRKHKIWEGDGLLVCFTDSCLLKSEDERDV-ICRSSALKGLDQLEDGRIINIGSWSV 88

Query: 511 EIHKQFTS 518
           EI ++  +
Sbjct: 89  EIQERIAT 96


>Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical
           protein T24B8.2 protein.
          Length = 411

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 495 NESLDGQIINVTEESIEIHKQFTSEW-DSRRSSSVDLEKEVKEIFERDLRRRGAALSTAS 553
           +E++D  ++N  +E  EI +  +S + ++   +  DLE+E++++   + +     L  A 
Sbjct: 324 HETMD-DVVNSMDEYKEIEEAISSPFVNANGFNDADLEQELEDLISDNKKNESVHLPEAP 382

Query: 554 NNAFG 558
            N FG
Sbjct: 383 TNRFG 387


>Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical
           protein F22D6.6 protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 505 VTEESIEIHKQFTSEWDSRRSSSVDLEKEVKE 536
           +  E++EIH+ F ++W  + S S D  KE KE
Sbjct: 271 IPNEALEIHRSFPTDW-KKTSISEDQMKEEKE 301


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,658
Number of Sequences: 27539
Number of extensions: 559145
Number of successful extensions: 1448
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1439
Number of HSP's gapped (non-prelim): 17
length of query: 562
length of database: 12,573,161
effective HSP length: 85
effective length of query: 477
effective length of database: 10,232,346
effective search space: 4880829042
effective search space used: 4880829042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)