Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002696-TA|BGIBMGA002696-PA|IPR002509|Polysaccharide
deacetylase
(1612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 31 1.00
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 31 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 3.0
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 29 4.0
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 29 7.0
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 29 7.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 28 9.3
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ... 28 9.3
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 28 9.3
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 28 9.3
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 31.5 bits (68), Expect = 1.00
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 580 TKAQQTAGTPLDAIRPKLKPPNFKDDRQLPITYSFT 615
TKA + A P++AIRP +KPP + + ++ FT
Sbjct: 41 TKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRGFT 76
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 31.1 bits (67), Expect = 1.3
Identities = 44/191 (23%), Positives = 69/191 (36%), Gaps = 13/191 (6%)
Query: 860 YTIKPETTTKNHNDVSAPIKSFSNNENNKIPIPVLVEYANPTSSVLMRPDVSNYEXXXXX 919
+ + E + N S P + N N P P N SVL PD S+
Sbjct: 108 FGLPQEDSQDNTQTYSTPYTTM-NPSNEMHPYPPATFENN--YSVL--PDHSSQPNAYSF 162
Query: 920 XXXXXXXLKKPISNESGPYTSAPPKYLNQTTLRPYTVRHRLAKPTT---VPETSKQNHTQ 976
+ P N+ Y + + TT+ ++ +H L++ T VP + +
Sbjct: 163 TGSNILPTQSPSLNQMQDYQNLQQNGSSNTTIPSFSSQHDLSQGLTHQPVPNHDEYAFSY 222
Query: 977 NRVRMRHPNIVAQKLTTPRDSYNQETRFTKINHDGKTNSLEPTENLSPVSYSPSPRPKML 1036
R P I A P S+ + T K+N + S + N SP Y S + +
Sbjct: 223 PYELQRKPLIPAH----PVPSF-RPTSALKVNMNSNVPSSDSVRNSSPNQYYASTSKQSI 277
Query: 1037 YNGSQAYNPDQ 1047
+ SQ P Q
Sbjct: 278 PSQSQNLQPPQ 288
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 3.0
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 806 PVVKPKYMPSTEIKP--QRPPLAQNYKXXXXXXXXXXXXTATVKPLQKVTQRPTKYYTIK 863
PV P + +I+P Q ++ N TV+ Q Q PT
Sbjct: 1270 PVAAPT---AQQIQPGKQASAVSSNVPAVSASISTPPAVVPTVQHPQPTKQIPTAAVK-D 1325
Query: 864 PETTTKNHNDVSAPIKSFSNNENNKIPIPVLVEYANPTSSVLMRPDVSN 912
P TT+ + N P ++ N+ +K+ + V A PTS PD SN
Sbjct: 1326 PSTTSTSFNTAPIPQQAPLENQFSKMSLEPPVRPAVPTSPKPQIPDSSN 1374
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 483 PAPKVIPKIVNSAVGSSSPANV-GSVLPSSTLNYQGMSTPKPFTPDN 528
P P +IP + S +PA S LP S ++ + +P P P +
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQH 1539
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 1503 AAWFTQPHHKE--GFIMFLDHINQMPDVWIVTNWQ 1535
++WF H E I FL+H+ ++PDV V N Q
Sbjct: 290 SSWFNDMHDMELIDLIPFLEHLARVPDVSTVLNLQ 324
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 28.7 bits (61), Expect = 7.0
Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 6/162 (3%)
Query: 63 PASLPQAGKIGSFSFGSQIDDRRAATITPAPQKYNEDIDDVTDTLHDRQLDFNTNLVDVT 122
P +G I SF I P ++ + +D+ D T ++
Sbjct: 129 PDKKAASGNINDDSFFKCIQKAYEILSDPVRRRQFDSVDENADVEPPESTTKET-FFELW 187
Query: 123 DSIQKPLLRKKREVAVDSLGKNLTFVETVNNTFDNPENISKRSDSGEEMEYYEAD-PEDV 181
+ + R ++ V SLG +E+ DN N DS EY + D P+D
Sbjct: 188 TPVFESEARFSKKQPVPSLGT----IESTRAEVDNFYNFWYNFDSWRSFEYLDKDIPDDG 243
Query: 182 GVIDDHFIQDDVERGKRQIRYYLKNGYKPPLKNWAIAKPVRL 223
D+ Q+ R +RQ N L + A+A R+
Sbjct: 244 ESRDNKRFQEKKNRSERQKNKARDNARLRNLVDTALASDPRI 285
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 28.7 bits (61), Expect = 7.0
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 19 EIESDRQQRVYRGQPSTIGQVQKDRDGYGSQAISSGRTVNSNIIPASLPQAGKIGSFSFG 78
E+ES+R+ R+Y+ Q IG+V D ++ + + SN I Q G IGS SFG
Sbjct: 1077 ELESNRRDRLYKSQ--LIGRVLDDTT-KENRLLKELASSKSN-ITIRWQQGGLIGSGSFG 1132
Query: 79 S 79
+
Sbjct: 1133 T 1133
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 28.3 bits (60), Expect = 9.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 673 SVTTRPYFATSVKPYEAHVKSTQKPLTTITNEQLSALQQYWKNNPTANPLSVQS 726
SV + TS + VK+TQ P +I+ E SA + +PTAN + + +
Sbjct: 508 SVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDINA 561
>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 9.3
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 21 ESDRQQRVYRGQPSTIGQVQKDRDGY--GSQAISSGRTVNSNIIPASLPQAG-KIGSFSF 77
E + ++R YR S ++QK+ GY +A+++ +T +N I A AG K G ++
Sbjct: 31 EFETEERRYRTMESAAKKLQKEAKGYLDALRAMTASQTRIANTIDAFYGDAGSKDGVSAY 90
Query: 78 GSQ-IDDRRAATI 89
Q ++D A T+
Sbjct: 91 YRQVVEDLDADTV 103
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 28.3 bits (60), Expect = 9.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 136 VAVDSLGKNLTFVETVNNTFDNPENISKRSDSGEEMEYYEADPEDVGVID 185
V VD LGK+ T + N + + ++ DS Y ADP + GV+D
Sbjct: 288 VEVDVLGKDGTNIYPTQNQVVEQKQMQQKLDSMSPEWYQAADPSN-GVVD 336
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 28.3 bits (60), Expect = 9.3
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 1297 KGLYTDLFEKGRVNPNGCPITATFYV-----SHEWTDYSQVQNLYSAGHEMASHTISHSF 1351
+ ++TDL+E +PN +T+ + S S N +S H+ S
Sbjct: 217 RNIHTDLYETHASSPNSLLVTSLAEIWKSEASRRNLTSSDETNSFSKLHQSQFGLKEESS 276
Query: 1352 GEQFSQKKWNREVAGQREILAAYGGVKLEDVRGMRAPFL 1390
E S + W EVA +++L KLE + P +
Sbjct: 277 HEPRSSQHWKNEVA-MKDLLKNLIKSKLESSSDVNTPLI 314
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.132 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,831,028
Number of Sequences: 5004
Number of extensions: 360954
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 11
length of query: 1612
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1530
effective length of database: 1,952,150
effective search space: 2986789500
effective search space used: 2986789500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)
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