GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002696-TA|BGIBMGA002696-PA|IPR002509|Polysaccharide
deacetylase
         (1612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987...    34   0.82 
06_03_1467 + 30353122-30353937                                         34   1.1  
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564...    32   3.3  

>11_06_0249 +
           21697863-21697923,21698119-21698128,21698160-21698766,
           21699011-21699090,21699182-21699263,21699357-21699428,
           21700128-21700406
          Length = 396

 Score = 34.3 bits (75), Expect = 0.82
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 15/127 (11%)

Query: 76  SFGSQIDDRRAATITPAPQKYNEDIDDVTDTLHDRQLDFNTN--LVDVTD-SIQKPLLRK 132
           SF  ++D     TITPA    N D+ D T   H  ++    N  LV+ +D SI +PL   
Sbjct: 35  SFNEELDS--TVTITPASD--NIDVSDDTSVPHPSEVPATVNVVLVEQSDNSISEPLESD 90

Query: 133 KREVAVDSLGKNLTFVETVNNTFDNPENISKRSDSGEEMEYYEADPEDVGVIDDHFIQDD 192
               A +++    +   T NN   N E ++         E YEA P +     D   Q D
Sbjct: 91  GANGATENVVPLASEKSTDNNDAMNSEPVNS--------EPYEASPANNAEKGDVMQQSD 142

Query: 193 VERGKRQ 199
              G +Q
Sbjct: 143 ENNGDKQ 149


>06_03_1467 + 30353122-30353937
          Length = 271

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 677 RPYFATSVKPYEAHVKSTQKPLTTITNEQLSALQQYWKNNPTANPLSVQSV 727
           RP+ A  V+   A V     PL T  ++QL AL+  W +NP  NPLS+  V
Sbjct: 3   RPFAAGHVR--SASVPCHSHPLLTHVDDQLLALRS-WTSNPGPNPLSLAHV 50


>04_04_1096 + 30855192-30855225,30856135-30856208,30856293-30856467,
            30856842-30856918,30857042-30857279,30857414-30857478,
            30857628-30858086,30858253-30858465,30858613-30859002
          Length = 574

 Score = 32.3 bits (70), Expect = 3.3
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 1022 LSPVSYSPSPRPKMLYNGSQAYNPDQYDPYYAVYDEDGELYKDTDYVQQYNVASVRPAVQ 1081
            LS   Y P   P M Y+ S A    Q+DP    Y  DG LY  T    Q+  +     +Q
Sbjct: 145  LSSPYYQPPASPSMGYSNS-ATGMSQFDPMQEYYLPDGLLYSPTPGFHQHFGSFDGTQMQ 203

Query: 1082 QTYRG 1086
            Q+  G
Sbjct: 204  QSVTG 208


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,154,524
Number of Sequences: 37544
Number of extensions: 2147524
Number of successful extensions: 3572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3571
Number of HSP's gapped (non-prelim): 4
length of query: 1612
length of database: 14,793,348
effective HSP length: 92
effective length of query: 1520
effective length of database: 11,339,300
effective search space: 17235736000
effective search space used: 17235736000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 67 (31.1 bits)