GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002696-TA|BGIBMGA002696-PA|IPR002509|Polysaccharide
deacetylase
         (1612 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        27   1.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   6.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   6.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 1425 TLDYKLFHDCMIPPCPTKSYPGVWEVPMVMWQDL 1458
            T   ++F D +I   P KS+PGV  +    W+ +
Sbjct: 117  TKHLQVFRDHLINQIPDKSFPGVGVIDFESWRPI 150


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 858 KYYTIKPETTTKNHNDVSAPIKSFSNNENNKI 889
           K +   P+     +N+ ++ IKS SNNE  K+
Sbjct: 518 KAFNNVPKKLNMFYNNFNSDIKSISNNEQVKV 549


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 858 KYYTIKPETTTKNHNDVSAPIKSFSNNENNKI 889
           K +   P+     +N+ ++ IKS SNNE  K+
Sbjct: 518 KAFNNVPKKLNMFYNNFNSDIKSISNNEQVKV 549


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,501
Number of Sequences: 429
Number of extensions: 25380
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 3
length of query: 1612
length of database: 140,377
effective HSP length: 67
effective length of query: 1545
effective length of database: 111,634
effective search space: 172474530
effective search space used: 172474530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)