GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002695-TA|BGIBMGA002695-PA|IPR001159|Double-stranded RNA
binding
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    28   4.6  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    28   4.6  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   6.1  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   6.1  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   8.1  

>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 439 HNVLLAMEMITNGSTGNTATVNGSELSTSASSDGSKSNGTDSKNKVSD 486
           H+  L   ++ +G   +++ ++  E   +A  D +K++GTD++  +SD
Sbjct: 202 HDSTLDSGVVIDGREKSSSELHEEESEQAAEGDTAKNSGTDAQAPLSD 249


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 420 PHSATGRGPNKKTAKRRAAHNVLLAMEMITNGSTGNTATVNGSELSTSASSDGSKSNGTD 479
           P S+     +K TA       V+ A+   TN +T  T     +   +S+SS  S S+ + 
Sbjct: 263 PTSSKSLTTSKTTASGHITKGVMEALS--TNDTTNTTDDATNTTSDSSSSSSASASSSSS 320

Query: 480 SKNKVSDIAASETRQPV 496
           S +     AAS   QPV
Sbjct: 321 SSS-----AASLVSQPV 332


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 414 VRCDAPPHSATGRGPNKKTAKRRAAHNVLLAMEMITNGSTGNTATVNGSELSTS-ASSDG 472
           +R  A  HS+T       T     A             +T N +T N +   TS A+S+G
Sbjct: 134 IRAPAGNHSSTTANRTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNG 193

Query: 473 SKSN-GTDSKNKVSDIAASET 492
           + +  GT + ++ S +   +T
Sbjct: 194 TGTGAGTGASHRSSPVTNRQT 214


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 21/91 (23%), Positives = 39/91 (42%)

Query: 404 RGAARRREFLVRCDAPPHSATGRGPNKKTAKRRAAHNVLLAMEMITNGSTGNTATVNGSE 463
           +GA +      R      SAT    N ++ K    + V   +      S+ N  ++  SE
Sbjct: 22  QGAKKWSAVAARGSKIAQSATNDHRNVESIKVVPENRVRGGVAAKATDSSSNVTSLASSE 81

Query: 464 LSTSASSDGSKSNGTDSKNKVSDIAASETRQ 494
            + S+ S  +KSN +  +   +D+A S  ++
Sbjct: 82  ENVSSVSGSAKSNNSQQRVWKTDVAISAEKR 112


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 10/116 (8%)

Query: 380 PISXXXXXXXXXXXXSPHYAVLEERGAARRREFLVRCDAPPHSATGRGPNKKTAKRRAAH 439
           P S            +PH A +    AA     L    +P  S    GP   +     + 
Sbjct: 145 PPSASVSRANSTATTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPVSTTATPSR 204

Query: 440 NVLLAMEMI--------TNGSTGNTATVNGSE--LSTSASSDGSKSNGTDSKNKVS 485
           N +  ++ I         N  TG  A V  +E   ST  S  G  +N + + N  S
Sbjct: 205 NPVTRLQRIFSQNSVSRQNSRTGRGAAVANTEETNSTGGSETGGAANSSSTSNPSS 260


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.128    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,122
Number of Sequences: 5004
Number of extensions: 55660
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 7
length of query: 648
length of database: 2,362,478
effective HSP length: 77
effective length of query: 571
effective length of database: 1,977,170
effective search space: 1128964070
effective search space used: 1128964070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)