GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002695-TA|BGIBMGA002695-PA|IPR001159|Double-stranded RNA
binding
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    38   0.025
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86...    34   0.41 
01_05_0421 + 21990034-21990392,21991691-21992681                       31   2.2  
04_04_1497 - 33996990-33997178,33997915-33998127,33998320-339985...    29   8.7  
01_04_0047 - 15408802-15409068,15409418-15409478,15409516-154096...    29   8.7  

>05_05_0155 +
          22787658-22787930,22788029-22788096,22789600-22789915,
          22790207-22790323
          Length = 257

 Score = 37.9 bits (84), Expect = 0.025
 Identities = 13/24 (54%), Positives = 13/24 (54%)

Query: 4  HPPQHMPGHQAMPAHHQMPPHQLH 27
          HPP H P H   P HH  PPH  H
Sbjct: 44 HPPHHHPPHHPHPPHHPHPPHHPH 67



 Score = 35.9 bits (79), Expect = 0.10
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 4  HPPQHM-PGHQAMPAHHQMPPHQLHRENRH 32
          HPP H  P H   P HH  PPH  H  + H
Sbjct: 49 HPPHHPHPPHHPHPPHHPHPPHHPHPPHHH 78



 Score = 31.1 bits (67), Expect = 2.9
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 4  HPPQHMPGHQAMPAHHQMPPHQLH 27
          HP  H P H   P HH  PPH  H
Sbjct: 33 HPHHHPPHHHPHPPHHH-PPHHPH 55


>06_01_0109 -
           863806-864045,864448-864566,864680-864851,864914-865108,
           865179-865388,865738-865926
          Length = 374

 Score = 33.9 bits (74), Expect = 0.41
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 405 GAARRREFLVRCDAPPHSATGRGPNKKTAKRRAAH--NVLLAMEMITNGSTGNTATVNGS 462
           G   RR  L R   P   +  RG +  +   + A+  NV+   +++ +G    TA+   +
Sbjct: 42  GGDARRHGLRRLVTPLRGSACRGESTNSRVLQCANEANVVTEDDIVNDGIDDETAS--DA 99

Query: 463 ELSTSASSDGSKSNGTDSKNKVSDIAASETRQPVP 497
           E+   A ++G +S+GTD    VS I     +QP+P
Sbjct: 100 EMDEDAEANGDESSGTDEDASVSWI----EQQPLP 130


>01_05_0421 + 21990034-21990392,21991691-21992681
          Length = 449

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 9   MPGHQAMPAHHQMPPHQLHRENRHVTLTRRAEGWAGMG 46
           M G++  P HH  P HQ H++ +        E W GMG
Sbjct: 410 MAGYEPPPPHHGQPQHQ-HQQQQQQQQGGSNEPWHGMG 446


>04_04_1497 -
           33996990-33997178,33997915-33998127,33998320-33998553,
           33998622-33998818,33999327-33999491,33999758-33999857,
           34000213-34000428
          Length = 437

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 397 HYAVLEERGAARRREFLVRCD-APPHSA----TGRGPNKKTAKRRAAHNVLLAMEMITNG 451
           H      RG+ARRR   VRC  AP  +A     G G     A  R   + L  +E     
Sbjct: 21  HLCSAPPRGSARRRHASVRCSFAPVETARIKVVGVGGGGNNAVNRMIGSGLQGIEFYAIN 80

Query: 452 STGNTATVNGSELSTSASSDGSKSNGTDSKNKVSDIAASETRQPVPGVL 500
           +       + ++         ++  GT     + + AA E+++ +   L
Sbjct: 81  TDSQALLNSQAQYPLQIGEQLTRGLGTGGNPNLGEQAAEESKEAIANAL 129


>01_04_0047 -
           15408802-15409068,15409418-15409478,15409516-15409626,
           15409707-15409958,15410044-15410270,15410971-15411230,
           15411373-15412279,15412370-15412567
          Length = 760

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 430 KKTAKRRAAHNVLLAMEMITNGSTGNTATVNGSELSTSASSDGSKSNGTDSKNKV 484
           ++ +KR+AA N     E      T  +A  + +E STSA   G K  G  SKNK+
Sbjct: 70  RRRSKRKAARN---RREEEVEMDTATSAPEH-TETSTSAGGSGKKRRGERSKNKL 120


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.128    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,976
Number of Sequences: 37544
Number of extensions: 430290
Number of successful extensions: 1462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1450
Number of HSP's gapped (non-prelim): 12
length of query: 648
length of database: 14,793,348
effective HSP length: 87
effective length of query: 561
effective length of database: 11,527,020
effective search space: 6466658220
effective search space used: 6466658220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)