GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002695-TA|BGIBMGA002695-PA|IPR001159|Double-stranded RNA
binding
         (648 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-5|AAB07566.1|  705|Caenorhabditis elegans Hypothetical pr...    79   7e-15
U67949-4|AAB07562.2|  284|Caenorhabditis elegans Hypothetical pr...    38   0.017
AF024501-9|AAB70372.1|  136|Caenorhabditis elegans Hypothetical ...    38   0.029
Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical p...    36   0.12 
Z70780-8|CAA94825.2|  266|Caenorhabditis elegans Hypothetical pr...    32   1.4  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    31   2.5  
U23486-7|AAC46775.1|  428|Caenorhabditis elegans Hypothetical pr...    31   2.5  
Z81581-6|CAB04666.1|  679|Caenorhabditis elegans Hypothetical pr...    31   3.3  
Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical pr...    31   3.3  
Z93379-3|CAB07590.1|  282|Caenorhabditis elegans Hypothetical pr...    29   7.7  
Z48582-7|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   7.7  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   7.7  
AL132952-11|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    29   7.7  
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    29   7.7  
AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical ...    29   7.7  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    29   7.7  

>U67949-5|AAB07566.1|  705|Caenorhabditis elegans Hypothetical
           protein F55A4.5 protein.
          Length = 705

 Score = 79.4 bits (187), Expect = 7e-15
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 145 KEKTPMCLVNELARYNKIKHQYRLTSETGPAHKKVFTVTLRLGEAEEYTAEGSSIKRAQ 203
           KEK+ MC V E+AR+NK++H Y L  E+GPAHKK+FTV L L EAE +   G+SIKRAQ
Sbjct: 75  KEKSAMCRVAEIARFNKLRHVYNLQDESGPAHKKLFTVKLVLTEAETFEGSGTSIKRAQ 133



 Score = 41.9 bits (94), Expect = 0.001
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 379 NPISXXXXXXXXXXXXSPHYAVLEERGAARRREFLVRCDAPPHSATGRGPNKKTAKRRAA 438
           NP+S             P + ++ E G ++ +EF+++         G+GPNK+ AKR AA
Sbjct: 413 NPVSRLIQVTQAKSKEHPTFELVAEHGVSKYKEFIIQVKYGDDVQEGKGPNKRLAKRAAA 472

Query: 439 HNVL 442
             +L
Sbjct: 473 EAML 476



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 554 AKDQLMYLSQLLGFTVQFSDFPKRNHGEYLSLVSLSTEPPVMCHGGGASTAHSHE 608
           A   L  LS    F++Q++ FP+    ++ ++VS+  E P++ HG G ST  + E
Sbjct: 633 AHHHLEQLSDFFKFSLQYTSFPQVGIDQHFTIVSIGLEAPLVGHGTGCSTTEADE 687



 Score = 33.5 bits (73), Expect = 0.47
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 398 YAVLEERGAARRREFLVRC------DAPPHSATGRGPNKKTAKRRAAHNVLLAMEMIT 449
           + VL+E G    R+++VRC      +     A G+G  KK+A++ A   +L  +E +T
Sbjct: 310 FEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKKKKSAQQEACTQLLATVEHLT 367


>U67949-4|AAB07562.2|  284|Caenorhabditis elegans Hypothetical
           protein F55A4.4 protein.
          Length = 284

 Score = 38.3 bits (85), Expect = 0.017
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 379 NPISXXXXXXXXXXXXSPHYAVLEERGAARRREFLVRCDAPPHSATGRGPNKKTAKRRAA 438
           NP++             P +  ++E+   + REF+++      +  GRGP+K  +KR AA
Sbjct: 143 NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHREFVIQATFENKTLEGRGPSKIISKRAAA 202

Query: 439 HNVLLAMEMITNGSTGNTATVNGSELSTSASSDGSK 474
             +L ++  I   S     T   + LS   +    K
Sbjct: 203 EAILESIGFI-KPSLSKPDTSEAAHLSPEQTDTNEK 237



 Score = 31.9 bits (69), Expect = 1.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 397 HYAVLEERGAARRREFLVRC------DAPPHSATGRGPNKKTAKRRAAHNVLLAMEMIT 449
           ++ VLEE G    R++ VR       +     A G+G NKK+A++ A   +L  +E +T
Sbjct: 60  NFEVLEEGGDQHNRQYAVRYTLVADDNVVKAKAMGKGKNKKSAQQEACTQLLATVEHLT 118


>AF024501-9|AAB70372.1|  136|Caenorhabditis elegans Hypothetical
           protein F39E9.7 protein.
          Length = 136

 Score = 37.5 bits (83), Expect = 0.029
 Identities = 18/70 (25%), Positives = 33/70 (47%)

Query: 379 NPISXXXXXXXXXXXXSPHYAVLEERGAARRREFLVRCDAPPHSATGRGPNKKTAKRRAA 438
           NP++             P +  ++E+   + R F+++      +  GRGP+K  AKR AA
Sbjct: 34  NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHRVFIIQATFEDKTLEGRGPSKMIAKRAAA 93

Query: 439 HNVLLAMEMI 448
             +L ++  I
Sbjct: 94  EAILESIGFI 103


>Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical
           protein Y49E10.17 protein.
          Length = 524

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 440 NVLLAMEMITNGSTGNTATVNGSELSTSASSDG-SKSNGTDSKNKVSDIAASETR 493
           N+  +    +NGS  ++ + NGS  S+  SS+G S S+G+ S N  S+I++S  R
Sbjct: 96  NISSSSRQPSNGSFRSSGSSNGSSSSSRRSSNGSSSSSGSTSDNSSSNISSSSRR 150



 Score = 30.3 bits (65), Expect = 4.4
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 422 SATGRGPNKKTAKRRAAHNVLLAMEMITNGSTGNTA-TVNGSELSTSASSDGSKSNGTDS 480
           S T  G +  ++  R   N        +NGS+ ++  + NGS  S+ ++SD S SN + S
Sbjct: 88  SCTSLGSSNISSSSRQPSNGSFRSSGSSNGSSSSSRRSSNGSSSSSGSTSDNSSSNISSS 147

Query: 481 KNKVSD 486
             + S+
Sbjct: 148 SRRSSN 153


>Z70780-8|CAA94825.2|  266|Caenorhabditis elegans Hypothetical
           protein F46B6.9 protein.
          Length = 266

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 432 TAKRRAAHNVLLAMEMITNGSTGNTATVNGSELSTSAS--SDGSKSNGTDSKNKVSDIAA 489
           T K RA     +  E ++  S  N +  N S+ S+  S  S  SKS+   +K+++   A+
Sbjct: 165 TKKLRADFMYWIEEERMSMRSRHNVSVDNRSDRSSKGSKASRASKSSARSAKSEIGTTAS 224

Query: 490 SETRQPVPGVLLMDY 504
           +E + P  G    DY
Sbjct: 225 TERKSPREGTSKGDY 239


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 443 LAMEMITNGSTGNTATVNGSELSTSASSDGSKSNGTDSKNKVSDIAASET 492
           L  +   + S+ +TA+ + S  + + SSD S S+ + S +  S  ++S+T
Sbjct: 38  LCSDSSDSSSSSSTASTSSSSSTAATSSDDSSSSSSSSSSSASSTSSSDT 87


>U23486-7|AAC46775.1|  428|Caenorhabditis elegans Hypothetical
           protein F07F6.1 protein.
          Length = 428

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 419 PPHSATGRGPNKKTAKRRAAHNVLLAMEMITNGSTG---NTATVNGSELSTSASSDGSKS 475
           PP S++ R  + K   R ++++  +A+      STG     ++ +G +  T   SD +++
Sbjct: 7   PPSSSSSRTTHPKK-NRHSSNSSSMALVTPAKSSTGAAPKQSSQSGWDYWTRVYSDDAQT 65

Query: 476 NGTDSKNKVSDIAASET 492
            GT    ++SD+ +SE+
Sbjct: 66  TGTPRDVRISDMLSSES 82


>Z81581-6|CAB04666.1|  679|Caenorhabditis elegans Hypothetical
           protein T02E1.3b protein.
          Length = 679

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 5   PPQHMPGHQAMPAHHQMPPHQLHRENRHV 33
           P +H P HQ    HH    HQLH+  +++
Sbjct: 418 PGRHRPPHQHPIHHHHQSQHQLHQHQQYL 446


>Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical
           protein T02E1.3a protein.
          Length = 646

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 5   PPQHMPGHQAMPAHHQMPPHQLHRENRHV 33
           P +H P HQ    HH    HQLH+  +++
Sbjct: 385 PGRHRPPHQHPIHHHHQSQHQLHQHQQYL 413


>Z93379-3|CAB07590.1|  282|Caenorhabditis elegans Hypothetical
           protein F21H7.4 protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/42 (33%), Positives = 15/42 (35%)

Query: 11  GHQAMPAHHQMPPHQLHRENRHVTLTRRAEGWAGMGRQWAAW 52
           GH   P     PPH+ HR  R        EGW    R    W
Sbjct: 75  GHHRPPHRPHRPPHRPHRPPRPPPRPECDEGWLRFERPNGVW 116


>Z48582-7|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 449  TNGSTGNTATVNGSELSTSASSDGSKSNGTDSKNKVSDIAASETRQPVPGV 499
            +NGS+G  +T + S   TS SSD S +NG  S         ++TR  +  V
Sbjct: 1214 SNGSSG-VSTKSSSGSDTSGSSDSSGANGAFSATAQPSTRTTKTRSSLATV 1263


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 449  TNGSTGNTATVNGSELSTSASSDGSKSNGTDSKNKVSDIAASETRQPVPGV 499
            +NGS+G  +T + S   TS SSD S +NG  S         ++TR  +  V
Sbjct: 1214 SNGSSG-VSTKSSSGSDTSGSSDSSGANGAFSATAQPSTRTTKTRSSLATV 1263


>AL132952-11|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 5   PPQHMPGHQAMPAHHQMPPHQLHRENR 31
           PP     H   PAHH   PHQLH ++R
Sbjct: 291 PPDPYQPH-GHPAHHIPNPHQLHHQHR 316


>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
           receptor TOL-1 protein.
          Length = 1221

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 558 LMYLSQLLGFTVQFSDFPKRNHGEYLSLVSLSTEPPVMCHGGGASTAHSHEQ 609
           L YL+ L+       D P+  H   LS +SLS+  P+ C   G S  H H +
Sbjct: 858 LKYLTLLIN---SLEDIPQVLHSTALSKISLSSN-PLRCDCSGGSQQHLHHR 905


>AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical
           protein Y24D9B.1 protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 5   PPQHMPGHQAMPAHHQMPPHQLHRENR 31
           PP     H   PAHH   PHQLH ++R
Sbjct: 291 PPDPYQPH-GHPAHHIPNPHQLHHQHR 316


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 449 TNGSTGNTATVNGSELSTSASSDGSKSNGT 478
           T+ ST   +TV+GS LST + S GS  +G+
Sbjct: 785 TDSSTTGISTVSGSSLSTISGSTGSTVSGS 814



 Score = 29.5 bits (63), Expect = 7.7
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 446  EMITNGSTGNT--ATVNGSELSTSASSDGS--KSNGTDSKNKVSDIAASETRQPVPG 498
            E   +GSTG+T  +T+  S +ST + S GS      T S++ VS ++AS T   V G
Sbjct: 1129 ESTVSGSTGSTGESTILESSVSTVSVSTGSTITDGSTASRSSVSTVSAS-TESTVSG 1184


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.128    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,634,037
Number of Sequences: 27539
Number of extensions: 324791
Number of successful extensions: 1283
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1249
Number of HSP's gapped (non-prelim): 39
length of query: 648
length of database: 12,573,161
effective HSP length: 86
effective length of query: 562
effective length of database: 10,204,807
effective search space: 5735101534
effective search space used: 5735101534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)