GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002695-TA|BGIBMGA002695-PA|IPR001159|Double-stranded RNA
binding
         (648 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    37   4e-04
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 37.1 bits (82), Expect = 4e-04
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 143 NSKEKTPMCLVNELARYNKIKHQYRLTSETGPAHKKVFTVTLRLGEAEEYTAEGSSIKRA 202
           N + K  +C +NEL    K    Y++  +TGP H  +FT+ +++ + + Y  +G + K A
Sbjct: 31  NPQPKNAVCALNEL----KSGAVYKVVDQTGPTHAPIFTIAVQI-DGQTYEGKGRTKKMA 85

Query: 203 Q 203
           +
Sbjct: 86  K 86


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 16   PAHHQMPPHQLHRENRHVTLTRRAEGW 42
            P   ++PP+QL  E   +  TRR + W
Sbjct: 1225 PTSQKVPPNQLTHEASELDKTRRYDFW 1251


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 286 LPALVYRVRVDVFVTTCTV 304
           LP + Y   VD F++ CTV
Sbjct: 298 LPPVSYLKAVDAFMSVCTV 316


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,941
Number of Sequences: 429
Number of extensions: 3483
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 648
length of database: 140,377
effective HSP length: 62
effective length of query: 586
effective length of database: 113,779
effective search space: 66674494
effective search space used: 66674494
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)