Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002694-TA|BGIBMGA002694-PA|undefined
(1821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 2.0
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 30 3.5
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 30 3.5
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 29 4.6
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 29 6.0
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo... 29 6.0
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 29 8.0
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 29 8.0
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 30.7 bits (66), Expect = 2.0
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 1219 SVTNLNSVELEKLFDDFKDLPKSDTKTTEPSTYEDVSPVVLSLAM-LEQCLELYDDMFSG 1277
S TN N E+E D +PKS + + + S V L ++ +++ ++ Y D FS
Sbjct: 194 SGTNNNPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMVYLLYSVHVDKIIQYYVDSFSV 253
Query: 1278 LSQWFQSSR-FINKLLCCLQMCLQSRRHYQTSLAALRCLTVYSRGPFSKELLLSDIDQF 1335
+ ++R + K + L S+ +L L++YS SK +L I F
Sbjct: 254 SERRLVNTRAVVLKEVQAPSHILMSKDSTSIYTISLEGLSIYSLHDESKSYMLIKILHF 312
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 29.9 bits (64), Expect = 3.5
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 274 HLKIDNLSTWIENTKEVVETELTKIQMCTEHSAMLLTWMLVTLQ 317
HL+ +L + E +K VET +T I+ EH+A L L+TL+
Sbjct: 131 HLR--DLEDYAEKSKNNVETLMTDIKDVVEHAAKLGAQRLITLE 172
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 29.9 bits (64), Expect = 3.5
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 238 SFGKNYGFSEFLGERHREQCLCIMYMEVCLFMIIIDHLKIDNLSTWIENTKEVVETELTK 297
++ KN SE+L R+ L + + + L+ L +D+L+ +N KE++E+ LT
Sbjct: 490 NYKKNTSISEYLLSSQRDVMLAVEHSLLLLY------LNMDDLAAGTKNAKELLESGLTG 543
Query: 298 IQ 299
++
Sbjct: 544 VE 545
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 29.5 bits (63), Expect = 4.6
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 411 LHQRDKDFGVVSLWNTALEYFPHHFSPLSNLAAGLVQ-----AGKNSVRNLISELKNLPV 465
++ K V LWN + F HFS L N LVQ + S+ L++ K LP
Sbjct: 1197 INSHGKQSVVEDLWNPLILKFSKHFSNLENSFHSLVQKLLSCCTEGSINALLNS-KCLPE 1255
Query: 466 YTEIYNPNAVP 476
+ + + N P
Sbjct: 1256 FIDAADENTTP 1266
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 29.1 bits (62), Expect = 6.0
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 1117 AKMVTPCMTALLNELEDLKDGRLVVMLAELYVIMLANWSHDC-FENRKASAKQIDRLLTN 1175
A+M T M L +DL GR V+++ + +V +H+C EN + S +R L N
Sbjct: 258 ARMTTSIMEEWLRWFDDLMKGRKVLLILDKFV------AHECALENIRNS----ERKLVN 307
Query: 1176 TAIIY 1180
T +++
Sbjct: 308 TTVVF 312
>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 831 TQNKQKDSLKVVPKVTSYINHVFNKSLAVLCCRLLKMFADSFQMSLFASLDMTAYQ 886
++ K+K L VVPK+ Y F ++ C +L++ A SL A L YQ
Sbjct: 76 SKEKKKLQLNVVPKIADYSQ--FKHLHSMWCSYILEVIAGCTGESLMAKLAKAEYQ 129
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 28.7 bits (61), Expect = 8.0
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 718 NIQDRRAMLQRCMRFLTLVL-QDQKTDGSTALLKRTCVYSLLHTENALVLLKIISLGNEH 776
NI + A L R +R L +VL Q T G + + ++ L A LL + N H
Sbjct: 677 NIAESTANLHRVLRSLAIVLPQVGYTQGMSWIAGALLMH--LPAPQAFALL-VFLFKNYH 733
Query: 777 LENMIQNETNWSSGTGSQFISIIQRCVAVLMFALRLKSLVTGS 819
L+N+ +E S QF +++ + L + + + T S
Sbjct: 734 LQNIFSSEMRGLSRVLHQFTRLVEDYMPSLAIHFKRQDIKTCS 776
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 28.7 bits (61), Expect = 8.0
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 1204 YEIKANSATAQSIIRSVTNLNSVELEKLFDDFKDLPKSDTKTTEPSTYEDVSPVVLSLAM 1263
Y + N+ ++I+ T + + + + D + K EPSTYE++ LS+
Sbjct: 1139 YNVSLNAYIVNALIKGFTKVGMISKARYYFDLLECEGMSGK--EPSTYENMVRAYLSVND 1196
Query: 1264 LEQCLELYDDM 1274
+ +E+ + +
Sbjct: 1197 GRKAMEIVEQL 1207
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,541,545
Number of Sequences: 5004
Number of extensions: 301588
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 11
length of query: 1821
length of database: 2,362,478
effective HSP length: 83
effective length of query: 1738
effective length of database: 1,947,146
effective search space: 3384139748
effective search space used: 3384139748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -