GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002694-TA|BGIBMGA002694-PA|undefined
         (1821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347...    37   0.17 
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    36   0.40 
01_06_0314 - 28410897-28410902,28410995-28411054,28411149-28411697     34   1.2  
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151...    33   2.1  
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706...    32   3.7  
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888...    31   6.5  

>01_06_1303 - 36132588-36132710,36133879-36134103,36134318-36134713,
            36135352-36135547,36135591-36135740,36135818-36135924,
            36135987-36136094,36136354-36136435,36136436-36136536,
            36136778-36136996,36137455-36137583,36137665-36137742,
            36137816-36137929,36138071-36138230,36139224-36139441
          Length = 801

 Score = 36.7 bits (81), Expect = 0.17
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 1627 VRDPNVPARHKQLVRRELCSELA--QFHDFVRKRILCAAHARPHLVRNKLGAWPLPSDEE 1684
            V  P  PA+ ++L+RR+L  E A  +  +FV  +++ +A A P   +    +W +   EE
Sbjct: 225  VYQPRPPAQVEELLRRKLAKEAAEKEMEEFV--QLIKSAKALPLDAKPSKDSWLM---EE 279

Query: 1685 EVKR-IEEARKEVNSAADDEDQRS 1707
            +VKR IE  +     A DDE +R+
Sbjct: 280  KVKRKIESLQAYAVDACDDEQRRT 303


>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
            3384640-3384709,3385878-3386002,3387128-3387268,
            3387362-3387519,3387644-3387803,3390136-3390213,
            3390326-3390385,3390473-3390528,3391886-3392090,
            3394107-3394192,3394296-3394406,3394536-3394607,
            3395453-3395538,3395730-3395878,3396107-3396250,
            3396335-3396442,3396997-3397027,3397609-3397713,
            3398283-3398407,3398807-3398950,3399073-3399177,
            3400748-3400799,3401549-3401696,3401936-3402130,
            3402404-3402647,3403152-3403259,3403887-3404034,
            3405467-3405525,3405876-3405945,3407008-3407333,
            3407666-3409204,3410526-3410733,3410870-3410906,
            3411024-3411072,3411143-3411271
          Length = 2025

 Score = 35.5 bits (78), Expect = 0.40
 Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 19/213 (8%)

Query: 955  ESILGYMAEYLGTVKADAKQLQSPLLGCIMGLFHALWKNNMQIL--VKKLRETATFWDYM 1012
            E ILGY+         +       +L  ++ L  ALW++  Q +  ++KLR + TFW+ +
Sbjct: 974  EQILGYIGR-----STELMDRSPSILSGVLDLLKALWESGAQFIYILEKLRSSRTFWENL 1028

Query: 1013 TSPLFSEIQPGLRTYS-QIFNVIGIELFVSRGKIENALKLMLEQLFDTNKTHLDKWINHI 1071
            +      I+    +Y       +  +  +    +    ++M  +LF   K   +   +  
Sbjct: 1029 SCC----IRAAFASYPIDSVETVDEKKSLRYCCLGTIFEIMSYELFLQGKLLTETKTSDP 1084

Query: 1072 FAFKGRSENEPVDKVPVWLGLLTSWKDFTTIFCKTLPISLN-----IAHKAKMVT-PCMT 1125
                 + + EP    P    ++  W D TT+      +S N     + H+AK+ +  C+ 
Sbjct: 1085 APVGSKEQKEP-SVAPCPSDIVLKWFDSTTMEDLVNHLSSNGYQNDLLHRAKVASCLCII 1143

Query: 1126 ALLNELEDLKDGRLVVMLAELYVIMLANWSHDC 1158
             LL +L     G L   L +   ++ +  +H C
Sbjct: 1144 RLLTKLSSGDTGSLSFSLVKKIQLISSKLTHMC 1176


>01_06_0314 - 28410897-28410902,28410995-28411054,28411149-28411697
          Length = 204

 Score = 33.9 bits (74), Expect = 1.2
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1730 HYLEKCAQTPTKGPPSPVSHSTPASDKKKETSRSSKRV 1767
            H L +C++ P   PP P +  TP+ DK+K   RS+  V
Sbjct: 56   HRLLRCSKNPASSPP-PAAPDTPSPDKEKAAHRSTDGV 92


>06_03_0107 + 16709543-16709640,16712555-16713408,16715051-16715193,
            16715312-16715573,16715835-16716150,16716257-16716383,
            16717088-16717149,16717291-16717374,16717438-16717494,
            16717705-16717768,16718057-16718152
          Length = 720

 Score = 33.1 bits (72), Expect = 2.1
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 1129 NELEDLKDGRLVVMLAELYVIML-----ANWSHDCFENRKASAKQID-RLLTNTAIIYEC 1182
            N L+D     L   L +L+V ML      N +    E+    ++ I  R+  NT+     
Sbjct: 193  NALKDAAQWALPSQLRQLFVTMLLFCEVTNPTRLFSEHESYMSEDISYRMPRNTSQASSS 252

Query: 1183 LHPRAKKAILSICTVAISGLDYEIKANSATAQSIIRSVTNLNSVELEKLFDDFKDLPKSD 1242
             +P  +  +L      +   DY++   S      I SV+  N + L++L  D  ++P + 
Sbjct: 253  TNPYVRSVLLIELDKLLRDADYDLSHFSLPLPDDIGSVSAQNRLVLDELSYDVYNMPSTI 312

Query: 1243 TKTTEPSTYEDVSPVVLSLAMLEQCLELYD 1272
             +    ++ +D+S    +  +  + + L+D
Sbjct: 313  DEAISATSLKDISVGQQNCKVFGRLIRLWD 342


>06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,
            7063557-7064432,7064457-7064660,7065039-7065143,
            7065407-7065496,7066066-7066176,7066349-7066780
          Length = 1586

 Score = 32.3 bits (70), Expect = 3.7
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 1690 EEARKEVNSAADDEDQRSLXXXXXXKRASHDSMREYILRKHYLEKCAQTPTKGPPSPVSH 1749
            ++ RKE+ + A  E+   L      K    +  R+Y L +  + + A    +  PSP   
Sbjct: 811  QQRRKEIRAKAQQEEAELLAQKLAEKLRESEQRRKYYLEQ--IRERASMDFRDQPSPFQR 868

Query: 1750 STPASDKKKETSRSS 1764
              P+ D +  +S ++
Sbjct: 869  RFPSKDNQNRSSSAN 883


>08_02_0907 - 22485714-22486859,22487836-22487882,22488456-22488830,
            22489339-22489500,22490325-22490439
          Length = 614

 Score = 31.5 bits (68), Expect = 6.5
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 1196 TVAISGLDYEIKANSATAQSIIRSVTNLNSVELEKLFDDFKDLPKSDTKTTEPSTYEDVS 1255
            T  +S L Y + A  +TA + +R+++  N VE++ +  D   +  S          E   
Sbjct: 29   TATLSQLQYAVVATHSTASAGLRALSGDNVVEIQAILCDVHKVVSSGFDFRRVVESELRI 88

Query: 1256 PVVLSLAMLEQCLELYDDMFSGLSQWFQSSRFINKLL 1292
            PV+  L+ +E+     +DM +G     + + F+N LL
Sbjct: 89   PVIYLLSKMEE-----EDMVAG-----EDAEFLNHLL 115


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,079,481
Number of Sequences: 37544
Number of extensions: 1687498
Number of successful extensions: 3951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3950
Number of HSP's gapped (non-prelim): 7
length of query: 1821
length of database: 14,793,348
effective HSP length: 93
effective length of query: 1728
effective length of database: 11,301,756
effective search space: 19529434368
effective search space used: 19529434368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 67 (31.1 bits)