GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002694-TA|BGIBMGA002694-PA|undefined
         (1821 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49207-1|CAA89074.1|  242|Caenorhabditis elegans Hypothetical pr...    33   2.5  
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr...    32   4.4  
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr...    32   4.4  
AC024819-1|AAF59589.1|  223|Caenorhabditis elegans Hypothetical ...    31   5.8  
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    31   5.8  
Z66516-5|CAD59163.1|   86|Caenorhabditis elegans Hypothetical pr...    31   7.7  
U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical pr...    31   7.7  
AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy pro...    31   7.7  
AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical ...    31   7.7  
AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical ...    31   7.7  

>Z49207-1|CAA89074.1|  242|Caenorhabditis elegans Hypothetical
           protein R07E3.2 protein.
          Length = 242

 Score = 32.7 bits (71), Expect = 2.5
 Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 282 TWIENTKEVVETELTKIQMCTEHSAMLLTWMLVTLQSDQHVKLFESQYQHFGSTAMKMKV 341
           TW E+T+EVV  ++   ++      ++  W   T   ++ V++ +++     +T  + + 
Sbjct: 133 TWEEDTEEVVTADMVATEVADTEEVVI--WEAATEWEEEAVEMVDTEVVAMEAT-WEEET 189

Query: 342 FEFLQQMLNSPVFSDQSKCSQIAKQRMFNILNELCDKFDGDGSLSNQTGII 392
           +E +      P   D +   + +K+ M + L E+ DK DG    + Q  ++
Sbjct: 190 WEVVVD--TDPTKEDHNNQWEDSKEVMVDNLTEVADKEDGHQCQTKQCRLL 238


>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
            C52A11.4d protein.
          Length = 2491

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 12/126 (9%)

Query: 1646 SELAQFHDFVRKRILCAAHARPHLVRNKLGAWPLPSDEEEVKRIEEARKEVNSAADDEDQ 1705
            S +  F   +  R       RP    +  G WP+P   EE +RI E  +E+ S  +  D 
Sbjct: 66   SSIGHFKFQMSARSFLTQPFRPCSTGSTRGLWPMPLQSEE-ERIREVLRELKSRKEGGDV 124

Query: 1706 RSLXXXXXXKRASHDSMREYILRKHYLEKCAQTPTKGPPSPVSHSTPASDKKKETSRSSK 1765
            +        +R       E IL+    ++ +  PT  P +  S +   S  +K     SK
Sbjct: 125  KE-----DIERI------ERILKDPLFKQLSHQPTSSPETFKSDNRRNSAAEKRVVEISK 173

Query: 1766 RVSWAE 1771
            R+  +E
Sbjct: 174  RIESSE 179


>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
            C52A11.4d protein.
          Length = 2491

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 12/126 (9%)

Query: 1646 SELAQFHDFVRKRILCAAHARPHLVRNKLGAWPLPSDEEEVKRIEEARKEVNSAADDEDQ 1705
            S +  F   +  R       RP    +  G WP+P   EE +RI E  +E+ S  +  D 
Sbjct: 66   SSIGHFKFQMSARSFLTQPFRPCSTGSTRGLWPMPLQSEE-ERIREVLRELKSRKEGGDV 124

Query: 1706 RSLXXXXXXKRASHDSMREYILRKHYLEKCAQTPTKGPPSPVSHSTPASDKKKETSRSSK 1765
            +        +R       E IL+    ++ +  PT  P +  S +   S  +K     SK
Sbjct: 125  KE-----DIERI------ERILKDPLFKQLSHQPTSSPETFKSDNRRNSAAEKRVVEISK 173

Query: 1766 RVSWAE 1771
            R+  +E
Sbjct: 174  RIESSE 179


>AC024819-1|AAF59589.1|  223|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.1 protein.
          Length = 223

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 775 EHLENMIQNETNWSSGTGSQFISIIQRCVAVLMFALRLKSLVTGSNEMTPLEHLIFTQ-N 833
           E  +N+I+NE      TG++ +SI+++    L  A R++  +  S E+  +E L+  Q N
Sbjct: 66  EEEKNLIENELEEIERTGARLLSIVEQKDNFL--ASRIRRFMEKSKELVGIETLLRLQLN 123

Query: 834 KQKDSLK 840
           K  + +K
Sbjct: 124 KHNERIK 130


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 31.5 bits (68), Expect = 5.8
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 818 GSNEMTPLEHLIFTQNKQKDSLKVVPKVTSYINHVFNKSL 857
           GS+E+ P++ +IF  +K  DSLK   K+   I+ VF K L
Sbjct: 167 GSHEIHPVK-IIFRFSKYPDSLKYKKKILYVIDRVFEKQL 205


>Z66516-5|CAD59163.1|   86|Caenorhabditis elegans Hypothetical
           protein W03C9.8 protein.
          Length = 86

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 469 IYNPNAV--PLVSIQYDDAIVGREYYPLGDPSYRIETGSKATIMERK 513
           +YN  A+  PL ++ +DDA+ G E   +G  S + +  +K T   RK
Sbjct: 40  LYNYCAISKPLPAVSFDDALGGEEEALIGSKSQKSQKSTKQTASSRK 86


>U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical protein
            T05A12.3 protein.
          Length = 655

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 1656 RKRILCAAHARPHLVRNKLGAWPLPSDEEEVKRIEEARKEVNSAADDEDQRSLXXXXXXK 1715
            ++ ++ A  A P   RN   +    S +  ++ + EA ++     + E Q+SL      K
Sbjct: 411  QQALMKAIAAAPGSSRNAPSSSNSQSSKNHIQAVREAERQREK--EREKQKSL------K 462

Query: 1716 RASHDSMREYILRKHYLEKCAQTPTKGPPSPVSHSTPASDKKKETSRSSKRVSWAE 1771
            RA  D M +   R+  ++K ++ P     S    S+ +S    +T RS +    AE
Sbjct: 463  RARGDQMMKEYEREKKIQKTSEKPGPSSSSHKQSSSSSSKSNGDTKRSYEARRMAE 518


>AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy protein
            9 protein.
          Length = 947

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1700 ADDEDQRSLXXXXXXKRASHDSMREYILRKHYLEKCAQTPTKGPPSPVSHS 1750
            A +++QR+L        + HDS  E     HY E+   T   GPP+  S S
Sbjct: 74   ASNDEQRNLIASSSSHHSYHDSPAEEPPETHY-EQFTATHNHGPPTMASSS 123


>AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical
            protein T22H9.2b protein.
          Length = 719

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1700 ADDEDQRSLXXXXXXKRASHDSMREYILRKHYLEKCAQTPTKGPPSPVSHS 1750
            A +++QR+L        + HDS  E     HY E+   T   GPP+  S S
Sbjct: 74   ASNDEQRNLIASSSSHHSYHDSPAEEPPETHY-EQFTATHNHGPPTMASSS 123


>AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical
            protein T22H9.2a protein.
          Length = 880

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1700 ADDEDQRSLXXXXXXKRASHDSMREYILRKHYLEKCAQTPTKGPPSPVSHS 1750
            A +++QR+L        + HDS  E     HY E+   T   GPP+  S S
Sbjct: 74   ASNDEQRNLIASSSSHHSYHDSPAEEPPETHY-EQFTATHNHGPPTMASSS 123


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,132,169
Number of Sequences: 27539
Number of extensions: 1584295
Number of successful extensions: 4184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4174
Number of HSP's gapped (non-prelim): 17
length of query: 1821
length of database: 12,573,161
effective HSP length: 92
effective length of query: 1729
effective length of database: 10,039,573
effective search space: 17358421717
effective search space used: 17358421717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 67 (31.1 bits)