GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002694-TA|BGIBMGA002694-PA|undefined
         (1821 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   3.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   5.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 1024 LRTYSQIFNVIGIELFVSRGKIENALKLMLEQLFDTNKTHLDKWINHIFAFKGRSENE-- 1081
            L+ ++ +F    +E F+ +  I      + E + + ++ HLD+W N ++ +K    +   
Sbjct: 584  LQPWANVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQW-NWVYEWKELIPSHIM 642

Query: 1082 --PVDK--VPVWLGLLTSW 1096
               +DK   P WL +L  W
Sbjct: 643  AGLLDKFFFPKWLQVLALW 661


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
            protein.
          Length = 342

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 1034 IGIELFVSRGKIENALK-LMLEQLFDT------NKTHLDKWINHIFAFKGRSENEP 1082
            I  +L VS   IEN LK L   Q  DT       + HL + IN     K R+EN+P
Sbjct: 89   IAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKEKHLTQRINSCDLLKKRNENDP 144


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,639
Number of Sequences: 429
Number of extensions: 17299
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 2
length of query: 1821
length of database: 140,377
effective HSP length: 68
effective length of query: 1753
effective length of database: 111,205
effective search space: 194942365
effective search space used: 194942365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)