GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002693-TA|BGIBMGA002693-PA|IPR006162|Phosphopantetheine
attachment site, IPR001849|Pleckstrin-like,
IPR001331|Guanine-nucleotide dissociation stimulator, CDC24,
IPR000219|DH
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    30   7.7  
10_08_0025 - 14243249-14243377,14243935-14244174,14244266-142443...    30   7.7  
05_07_0154 - 28059097-28060641                                         30   7.7  
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465...    30   7.7  

>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 209 SFSKDS--QLKSTSCTELRDAMTNGKPEDVLSKILHDYKKIIKEWNFTIQDXXXXXXXXX 266
           S  K+S  +++S    EL +++   + E  +S  +  YKK   EW   + D         
Sbjct: 134 SLEKESLEKIESEVRLELSESLQGNELESAVSTEMKQYKK---EWESELDDLETHIAVLL 190

Query: 267 XXXNKSTSDLQSLHSTVSCGIPDKC 291
              + +  +L SL+ ++   +P+ C
Sbjct: 191 EQLDAAGVELPSLYKSIESQVPNVC 215


>10_08_0025 -
           14243249-14243377,14243935-14244174,14244266-14244360,
           14245120-14245198,14249528-14250202,14250288-14250338,
           14250439-14250813
          Length = 547

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 387 SGYKEEIEKPENQHLLPPTLVGQADVLFGNLHELFTFHQDVFLK-DLERCISATELVALC 445
           +G ++  E P    LLP + + +  VL+ +L    +  ++   K   ER  S  +L  +C
Sbjct: 374 NGEEKSFENPNE--LLPLSRLEEIGVLYWHLDPKKSESEEELTKIRRERGYSYFDLTEIC 431

Query: 446 FVEKRETFF-RLYSYYCQNIPRSERLRETLVDTHLF 480
             +K E +  +L S+YC++I   E +R  L  +  F
Sbjct: 432 -PDKLENYEEKLKSFYCEHIHADEEIRYCLEGSGYF 466


>05_07_0154 - 28059097-28060641
          Length = 514

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 384 LINSGYKEEIEKPENQHLLP--PTLV---GQAD-VLFGNLHELFTF 423
           L  SG  EE   PE  HL+P  PT+     +A+ V+FG L +LF F
Sbjct: 143 LERSGLSEETYVPEAMHLIPPEPTMANARAEAESVMFGALDKLFKF 188


>01_06_0923 +
           33044283-33044433,33044826-33045242,33046209-33046538,
           33046806-33046876,33047283-33047357,33047435-33047578,
           33047645-33047816,33047933-33048616,33048711-33048767,
           33048850-33048956,33049485-33049610,33050221-33050295,
           33050387-33050499,33050789-33050905,33051384-33051444,
           33051690-33051763,33052267-33052388,33052472-33052620,
           33053525-33053635,33053946-33054008,33054689-33054722,
           33055253-33055375,33055971-33056033,33056130-33056196,
           33056311-33056356,33056446-33056552,33056923-33056971,
           33057208-33057273,33057544-33057630
          Length = 1286

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 44  SSLNLSVGTSYSWYYKKNENPTTRKKSRLRRSASDSTLFSDYANQLTLFENEMNRNKCKK 103
           S L  S G +   YYKK E     K   + +   D+T  ++  ++    E+++  N   +
Sbjct: 629 SGLKFSFGLTP--YYKKEEYDNVDKVDSMDKG--DNTQMTEKLDRTVSLEHQLQSNDTSE 684

Query: 104 TASDVTKNTRIKY 116
                T+ T++KY
Sbjct: 685 PPCSTTETTKVKY 697


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,979,437
Number of Sequences: 37544
Number of extensions: 766224
Number of successful extensions: 1793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1792
Number of HSP's gapped (non-prelim): 5
length of query: 749
length of database: 14,793,348
effective HSP length: 88
effective length of query: 661
effective length of database: 11,489,476
effective search space: 7594543636
effective search space used: 7594543636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)