GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002693-TA|BGIBMGA002693-PA|IPR006162|Phosphopantetheine
attachment site, IPR001849|Pleckstrin-like,
IPR001331|Guanine-nucleotide dissociation stimulator, CDC24,
IPR000219|DH
         (749 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    28   0.32 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    28   0.32 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   1.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   6.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   6.9  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 57  YYKKNENPTTRKKSRLRRSAS-DSTLFSDYANQLTLFENEMNRNKCKKTASDVTKNTRIK 115
           Y K  E    R + R  R  S +  + S  +N  T+  N    N      ++   N ++ 
Sbjct: 55  YRKYRETSKERSRDRTERERSREPKIISSLSNN-TIHNNNYKYNYNNNNYNNNNYNKKLY 113

Query: 116 YNPRNIK----PVRMEPFTGNF 133
           YN  NI+    PV +  + GNF
Sbjct: 114 YNIINIEQIPVPVPVPVYCGNF 135


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 57  YYKKNENPTTRKKSRLRRSAS-DSTLFSDYANQLTLFENEMNRNKCKKTASDVTKNTRIK 115
           Y K  E    R + R  R  S +  + S  +N  T+  N    N      ++   N ++ 
Sbjct: 55  YRKYRETSKERSRDRAERERSREPKIISSLSNN-TIHNNNYKYNYNNNNYNNNNYNKKLY 113

Query: 116 YNPRNIK----PVRMEPFTGNF 133
           YN  NI+    PV +  + GNF
Sbjct: 114 YNIINIEQIPVPVPVPVYCGNF 135


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 406 LVGQADVLFGNLHELFTFHQDVFLKDLERCISAT 439
           ++ + D +FG+     TF   + +K LERC+  T
Sbjct: 374 VIQELDEIFGDSDRPATFQDTLEMKYLERCLLET 407


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 66  TRKKSRLRRSASDSTLFSDYANQLTLFENEMNRNKCKKTASDVTKNTRIKYNPRNIKPVR 125
           T K+ ++  S S++  +S+Y N    + N  N N        + KN  I  N   I PV 
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYN-NNYNNNYKKLYKNYII--NIEQI-PVP 130

Query: 126 MEPFTGNF 133
           +  + GNF
Sbjct: 131 VPVYYGNF 138


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 66  TRKKSRLRRSASDSTLFSDYANQLTLFENEMNRNKCKKTASDVTKNTRIKYNPRNIKPVR 125
           T K+ ++  S S++  +S+Y N    + N  N N        + KN  I  N   I PV 
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYN-NNYNNNYKKLYKNYII--NIEQI-PVP 130

Query: 126 MEPFTGNF 133
           +  + GNF
Sbjct: 131 VPVYYGNF 138


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,487
Number of Sequences: 429
Number of extensions: 8886
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 749
length of database: 140,377
effective HSP length: 63
effective length of query: 686
effective length of database: 113,350
effective search space: 77758100
effective search space used: 77758100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)