GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002692-TA|BGIBMGA002692-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    35   0.029
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    29   1.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   2.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   2.5  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   3.3  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   3.3  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    28   3.3  
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac...    28   3.3  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    28   3.3  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    28   3.3  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    27   4.4  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   5.8  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    27   7.7  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   7.7  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 60/275 (21%), Positives = 106/275 (38%), Gaps = 16/275 (5%)

Query: 136 LSEVSSKLFKEEFRFKVLVCSTVDELYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKF 195
           LSE  + L      F+  +  +V +L E+ +          +L  SH E       + K 
Sbjct: 572 LSESKNSLQTLCNAFQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTITK- 630

Query: 196 STLMKETSTKLDDFMHEIVDCDMGNDPTQTKELLDCQGTRYKALKSELSIATTQGEDLLT 255
              +K+TS+KL     E  + +   + T + E  D +    K  +S  S+   Q +    
Sbjct: 631 --QLKDTSSKLQQLQLERANFEQ-KESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDSL 687

Query: 256 QVRKPNLTYNIISHVAAVERLLVQLEETEKQFDNFWQKHSTKLNHWLKFRTFLLNFKQMQ 315
           +     L  ++     A+    ++ +   +  DN   KH T         + L + K   
Sbjct: 688 EKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTN 747

Query: 316 ATLDHHLKAACDMTEVGETASRVESLIQEA----HNFEKLCNC--DLDTASSVIDDGDKL 369
           A L   L  + +  +V    + VE+L Q++     +F  L N    +      + D    
Sbjct: 748 AILSSELTKSSE--DVKRLTANVETLTQDSKAMKQSFTSLVNSYQSISNLYHELRDDHVN 805

Query: 370 MQDPLSSVDHIESK----CEELRRTSALLIDKIQK 400
           MQ   +++   ESK    CE L + +  LID +QK
Sbjct: 806 MQSQNNTLLESESKLKTDCENLTQQNMTLIDNVQK 840



 Score = 33.9 bits (74), Expect = 0.050
 Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 18/226 (7%)

Query: 192 LEKFSTLMKETSTKLDDFMHEIVD-CDMGNDPTQTKELLDCQGTRYKALKSELSIATTQG 250
           LEK + + +E S  L++  H + +  D      +  E L  + + +  LKSE    + + 
Sbjct: 287 LEKCA-INEEDSKLLEELKHNVANYSDAIVHKDKLIEDLSTRISEFDNLKSERDTLSIKN 345

Query: 251 EDLLTQVRKP--NLTYNIISHVAAVERLLVQLEETEKQFDNFWQKHSTKLNHWLKFRTFL 308
           E L   +R    +L  +  S+ + +E  +V+L+E+ +        HS   +   K  +F 
Sbjct: 346 EKLEKLLRNTIGSLKDSRTSN-SQLEEEMVELKESNRTI------HSQLTDAESKLSSFE 398

Query: 309 LNFKQMQATLDHHLKAACDMTE-VGETASRVESLIQE-AHNFEKLC--NCDLDTASSVID 364
              K ++ ++D +        + V + +S++E      AH   KL   N + D  +  I 
Sbjct: 399 QENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEINSERDFQNKKIK 458

Query: 365 DGDKLMQDPLSSVDHIESKCEELRRTSALLIDKIQKRNLLLTKARE 410
           D +K+ QD  + ++   S   EL+  SAL+  K Q+ N L  + +E
Sbjct: 459 DFEKIEQDLRACLN---SSSNELKEKSALIDKKDQELNNLREQIKE 501



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 29/149 (19%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 141 SKLFKEEFRFKVLVCSTVDELYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMK 200
           SK  K+ F   V    ++  LY       +       +Q  ++  ++    L+     + 
Sbjct: 775 SKAMKQSFTSLVNSYQSISNLYHELRDDHVN------MQSQNNTLLESESKLKTDCENLT 828

Query: 201 ETSTKLDDFMHEIVDCDMGNDPTQTKELLDCQGTR---YKALKSELSIATTQGEDLLTQV 257
           + +  L D + +++   + N  ++  EL +  G      K L+S L++A +  + +LTQ+
Sbjct: 829 QQNMTLIDNVQKLMHKHV-NQESKVSELKEVNGKLSLDLKNLRSSLNVAISDNDQILTQL 887

Query: 258 RKPNLTYNIISHVAAVERLLVQLEETEKQ 286
            + +  Y+ +   +A     ++  E EKQ
Sbjct: 888 AELSKNYDSLEQESAQLNSGLKSLEAEKQ 916



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 53/268 (19%), Positives = 112/268 (41%), Gaps = 25/268 (9%)

Query: 166  ERSQLTPDLGGELQYSHSEWIQQRIALEK-FSTLMKETSTKLDDFMHEIVDCDMGNDPTQ 224
            E +++  DL  +LQ+ H +W+ QR  LEK      K    K  +    I   + G + T+
Sbjct: 1317 EFTKVVADLE-KLQHEHDDWLIQRGDLEKALKDSEKNFLRKEAEMTENIHSLEEGKEETK 1375

Query: 225  TKELLDCQGTRYKALKSELSIATTQGEDLLTQVRKPNLTYNIISHVAAVERLLVQLEET- 283
             KE+ +   +R +  +   +    Q + L  ++R   L  +++      E L++ LEE+ 
Sbjct: 1376 -KEIAEL-SSRLEDNQLATNKLKNQLDHLNQEIR---LKEDVLKE---KESLIISLEESL 1427

Query: 284  --EKQFDNFWQKHSTKLNHWL-----KFRTFLLNFKQMQATLDHHLKAACDMTEVGETAS 336
              ++Q ++       +L H L     K  + +   + + ++LD     + ++    E   
Sbjct: 1428 SNQRQKESSLLDAKNELEHMLDDTSRKNSSLMEKIESINSSLD---DKSFELASAVEKLG 1484

Query: 337  RVESLIQEAHNFEKLCNCDLDTASSVIDDGDKLMQ----DPLSSVDHIESKCEELRRTSA 392
             ++ L  E+ +  +     L  A   I   +  +Q    +  +S ++ E K  +      
Sbjct: 1485 ALQKLHSESLSLMENIKSQLQEAKEKIQVDESTIQELDHEITASKNNYEGKLNDKDSIIR 1544

Query: 393  LLIDKIQKRNLLLTKARELMDRIDKANE 420
             L + I++ N LL + +  + R+    E
Sbjct: 1545 DLSENIEQLNNLLAEEKSAVKRLSTEKE 1572


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 368 KLMQDPLSSVDHIESKCEELRRTSALLIDKIQKRNLLLTKARELMDRIDKAN 419
           +L+ +PL +   +E K  E  R  ALL ++++     L+KAR +M ++D+ N
Sbjct: 877 RLLSNPLHNFSELEEKYAEYLRKLALL-EEVKDLKKKLSKARSIM-QLDELN 926


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 140 SSKLFKEEFRFKVLVCSTVDELYEHFERSQLTPDLGG 176
           +S +FK E   K L    +DE+ EH E    + D+GG
Sbjct: 868 ASNMFKAENNQKKLEDMNLDEILEHAEDHDTSNDVGG 904


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 187  QQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGNDPTQ 224
            ++R+ALEK   +M++   +   F+ +  D D+G D T+
Sbjct: 1280 KKRLALEKQKKIMQQFRDQQASFLAQNTDFDIGEDQTE 1317


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 50/256 (19%), Positives = 107/256 (41%), Gaps = 16/256 (6%)

Query: 171 TPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCD---MGNDPTQTKE 227
           TPD       + +  +Q+  +L K   +M+ETS+ LD  + +        +    +  KE
Sbjct: 664 TPDKENVQSTNDAHIMQENFSLHKALEVMRETSSDLDKQLKDATASQKELIVQTSSFQKE 723

Query: 228 LLDCQGTRYKALKSELSIATTQGED---LLTQVRKPNLTYNIISHVAAVERLLVQLEETE 284
           L++ +  R+ A+   L    +   D   L+T +    +   +  +  A ER   Q  E  
Sbjct: 724 LVE-ERERHNAISKRLQEIESLYRDRELLVTNLEDQLVDQTVTINKFAFER--DQFRERS 780

Query: 285 KQFDNFWQKHSTKLNHWLKFRTFLLNFKQMQATLDHHLKAACDMTEVGETASRVESLIQ- 343
             F+N  +  + K+         L   + +++    + +   +M  +     + +++I  
Sbjct: 781 MGFENTIKDLTRKMEATDMLNVSL--HESLRSVQTENSELVTEMALLKAELVKKQAIIDA 838

Query: 344 EAHNFEKLC--NCDLDTASSVIDDGDKLMQDPL--SSVDHIESKCEELRRTSALLIDKIQ 399
            A+ ++KL   + + +T S+ I+   K   D L   S D   ++ E L     +   K++
Sbjct: 839 NANIYDKLTADHTNYETVSADINQNLKETLDKLLNGSSDFKNNEIELLHDQIRITNAKLE 898

Query: 400 KRNLLLTKARELMDRI 415
           KR  L+  ++ + D +
Sbjct: 899 KREKLINASKYIEDTL 914


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 243 LSIATTQGEDLLTQVRKPNLTYNIISHVAAVERLLVQLEETEKQF 287
           +++ +TQ +DL+  V KP   + ++ H   + +L+VQ  + ++ F
Sbjct: 5   VTVGSTQFDDLIRAVLKPEFQHCLVKH--GINQLIVQYGKGKQAF 47


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)

Query: 192 LEKFSTLMKETSTKLDDFMHEIVDCDMGNDPTQTKELLDCQGTRYKALKSELSIATTQGE 251
           +EKF   ++E    +  F  E+    + ++ TQ  E  + +   +  L+  L   T + E
Sbjct: 580 IEKFEKTIRENEESISLFKEEVEK--LTDEITQLSERYNDKCHEFDELQKRLQ--TLEEE 635

Query: 252 DLLTQVRKPNLTYNIISHVAAVERLLVQLEETEKQFDNFWQKHSTKLNHWLKFRTFLLNF 311
           +   +    + T N++  +   E    +++   K+ +   Q  + K +  +K     L  
Sbjct: 636 NNKAKEDSTSKTSNLLEQLKMTE---AEVDSLRKENEENKQVIALKESELVKSNDNKLLL 692

Query: 312 KQMQATLDHHLKAACDMTEVGETASRVESLIQEAHNFEKLCNCDLDTASSVIDDGDKLMQ 371
            +   +L+  L      TE+    +  ESL     N ++  N +LD+ +  + + + ++ 
Sbjct: 693 NEQIESLNDQLSQL--KTEMESVTTSKESLADYLSNLKERHNDELDSLNKKLREFEGILS 750

Query: 372 DPLSSVDHIESK 383
              S    IE +
Sbjct: 751 SNSSLKSEIEER 762


>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 136

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 243 LSIATTQGEDLLTQVRKPNLTYNIISHVAAVERLLVQLEETEKQFDNFWQKHS 295
           L IA  +G+D  T   +    Y I  H  ++ R + QL +  +Q  ++W  +S
Sbjct: 36  LDIAINEGKDKYTVAPE---VYQIECHTVSMVRAVEQLLDVSRQIKSYWLTNS 85


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 316 ATLDHHLKAACDMTEVGETASRVESLIQEAHNFEKLCNCDLDTAS--SVIDDGDKLMQDP 373
           AT+        + T   + ASR ++L Q+    E + N   + AS  S ++   + ++  
Sbjct: 435 ATISIESNHTMETTNTLKFASRAQNLPQDIRQAEAVTNVQAELASLHSALEKNAQEVEYY 494

Query: 374 LSSVDHIESKCEELRRTSALLIDKIQKRNLLLTKARELMDRI 415
            S V  + S  EE R T   +++  + +   +++AR  M+ +
Sbjct: 495 ASLVKQLTSDLEE-RDTYIAMLEAERSQGTAISRARLRMEEL 535


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 1   MVPLNSAFNIIKRYNEAECDGCGSEGDEARNVGELLLPQYALATGGLAK 49
           +V + + FN++ R NE   + C  +G          +P Y LA+G LAK
Sbjct: 183 VVSVQNLFNLVNRKNEKVLEYCEQKGIA-------FIPWYPLASGALAK 224


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 363 IDDGDKLMQDPLSSVDHIE---SKCEELRRTSALLIDKIQKRNLLLTKARELMDRID 416
           +D   K++   L+S+  IE   + C ++     + +DK++   +LL+  +EL D+I+
Sbjct: 267 LDKKSKILHTKLNSLQLIEGDLNACLKVLEECLVELDKLEHATVLLSTNQELCDQIE 323


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 221 DPTQTKELLDCQGTRYKALKSELSIATTQGEDLLTQVRKPNLTYNIISHVAAVERLLVQL 280
           D T+ +E+LD     Y AL      +  +G D      + ++  + I  + A  + +  +
Sbjct: 6   DATKVQEMLDALKAEYNALAHHSFASKARGNDY-----ESSMIQSQIQEIEAFRKTVDDM 60

Query: 281 EETEKQFDNFWQKHSTKLNHWLK 303
            E +K     ++K   KL   L+
Sbjct: 61  YEKQKSIRETYEKDINKLKRELE 83


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 153 LVCSTVDELYEHFERSQLTPDLGG--ELQYSHSEWI--QQRIALEKFSTLMKETSTKLDD 208
           L+ +T   +YE + R QLT    G  +L+  H E +  ++R   +K + +  ET +    
Sbjct: 278 LINTTETNIYERYRREQLTNRKSGIPKLKKEHYERLNNEKRAIQQKITQMTNETESFFQA 337

Query: 209 FMHEIVDC--DMGNDPTQTKELLDCQGTRYKALKS 241
              ++++    + ++ ++  E +    T+ ++LKS
Sbjct: 338 KEEKMIETRDALNSELSEYHERIRALETQIESLKS 372


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 164 HFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGNDPT 223
           HF+ +Q       E +YS  E+++Q   +++   +  E S        EI D    +   
Sbjct: 7   HFDPTQQNDSTIIESRYSPEEYLEQSFEIQRI--ISGENSEPQTVASQEISDSQEEDTTL 64

Query: 224 QTKELLDCQGTRYKALKSELSIATTQGEDLLTQ 256
            + +  DC GT Y  +  +    +   +D + +
Sbjct: 65  TSSQFEDC-GTEYNEVVEDDEFRSEDEDDFMDE 96


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,634
Number of Sequences: 5004
Number of extensions: 82800
Number of successful extensions: 234
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 20
length of query: 480
length of database: 2,362,478
effective HSP length: 75
effective length of query: 405
effective length of database: 1,987,178
effective search space: 804807090
effective search space used: 804807090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)