Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002692-TA|BGIBMGA002692-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0543 + 10427321-10428315,10428440-10429154 33 0.50
09_01_0041 + 746494-746691,747301-747495,750509-750631,751457-75... 33 0.50
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 33 0.66
04_04_0986 - 29931302-29932834 31 1.5
09_04_0505 + 18183203-18183294,18183388-18183436,18183719-181840... 31 2.7
08_02_1096 - 24280910-24281195,24281326-24281711 30 4.7
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 29 6.2
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 29 6.2
09_02_0531 + 10312743-10313293,10314313-10315030 29 6.2
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503 29 6.2
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 29 8.2
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 33.1 bits (72), Expect = 0.50
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 166 ERSQLTPDLGGELQYSHSEWIQQRIALE-KFSTLMKETS--TKLDDF-MHEIVDCDMGND 221
ER ++ LG L+Y H EW Q + + K S +M ++S TKL DF + +VD D G
Sbjct: 331 ERYKIILGLGSALRYLHEEWEQCVVHGDIKPSNIMLDSSYNTKLGDFGLARLVDHDKGWQ 390
Query: 222 PTQ 224
T+
Sbjct: 391 TTK 393
>09_01_0041 +
746494-746691,747301-747495,750509-750631,751457-751636,
752772-753058,754343-754907
Length = 515
Score = 33.1 bits (72), Expect = 0.50
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 254 LTQVRKPNLTYNIISHVAAVERLLVQLEET--EKQFDNFWQKHSTKLNHWLKFRTFLLNF 311
+T +PN T+N ISH A + +Q E EK N QK K R+ N
Sbjct: 115 MTTNMRPNDTFNTISHKALQREITLQEENAAYEKAISNCRQKIQEKQMEVTLLRS---NL 171
Query: 312 KQMQATLDHHLKAACDMTEVGETASRVESLIQEAHNFEKLCNCDLDTASSVIDDGDKLMQ 371
K+M+ + + LKA D + + AS+ K D + + + + L+
Sbjct: 172 KEMEIS-EQDLKAQLDNAQNEQYASQ-----------NKASAAASDNTGNALMEAESLIN 219
Query: 372 DPLSSVDHIESKCEELRRTSALLID 396
L S D ++ K EEL + L++D
Sbjct: 220 --LKSND-LKEKNEELAQAEGLIVD 241
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 32.7 bits (71), Expect = 0.66
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 271 AAVERLLVQLEETEKQFDNFWQKHSTK-LNHWLKFRTFLLNFKQMQATL-DHHLKAACDM 328
++ ++L V+LE + N +KHS LN T + K M+A D H +
Sbjct: 2248 SSAKQLSVELENARMEIHNL-EKHSEMLLNQKKNLETQVSELKDMEAVAHDQHGRIKDLS 2306
Query: 329 TEVGETASRVESLIQEAHNFEKLCNCDLDTASSVIDDGDKLMQDPLSSVDHIESKCEELR 388
E+ + +E L+Q E+ +L+ + +D +K++Q+ ++ +E +
Sbjct: 2307 DELSKKDQEIEGLMQALDEEER----ELEVLENKSNDLEKMLQEKEFALKSLEVSRTKAL 2362
Query: 389 RTSALLIDKIQKRNLL 404
A +DK + + L
Sbjct: 2363 TKLATTVDKFDELHSL 2378
>04_04_0986 - 29931302-29932834
Length = 510
Score = 31.5 bits (68), Expect = 1.5
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 20 DGCGSEGDEARNVGELLLPQYALATGGLAKDHRPLITFPDNNNFHLITASEY-RRLLLYL 78
D G D RN+ L + A+A L+K HR L+T + HL+ + R + YL
Sbjct: 45 DAGGMCDDVLRNIFSRLPARAAVACTALSKHHRRLVTGAEFRRLHLLLGAPLPRPHVAYL 104
Query: 79 TSVPSILEAD 88
+ P D
Sbjct: 105 ATAPITRRGD 114
>09_04_0505 +
18183203-18183294,18183388-18183436,18183719-18184003,
18184914-18185135,18185272-18185421
Length = 265
Score = 30.7 bits (66), Expect = 2.7
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 130 SFLQKALSEVSSKLFKEEFRFKVLVCST--VDELYEHF-ERSQLTPDLGGELQYSHSEWI 186
S LQK L E L E + + VDEL E+ G EL + +
Sbjct: 87 SGLQKKLLEKDEALRSAEHLISRISAANAAVDELRGQLTEKESQIESTGSELHGAKIQLA 146
Query: 187 QQRIALEKFSTLMKETSTKLDDFMHEIVDCDM 218
+++ ALEK K +STK+++ ++ D+
Sbjct: 147 EKQAALEKLEWEAKVSSTKVEELQVDVASMDV 178
>08_02_1096 - 24280910-24281195,24281326-24281711
Length = 223
Score = 29.9 bits (64), Expect = 4.7
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 27 DEARNVGELLLPQYALATGGLAKDHRPLITFPDNNNFHLITASEY-RRLLLYLTSVPSIL 85
D RN+ L + A+A+ L+ HR LIT PD H + R + Y+ + P +
Sbjct: 36 DVVRNIFARLPARDAVASMALSWHHRRLITSPDFVRLHCRHGAPLPRPHIAYVATAPVVT 95
Query: 86 EADM 89
DM
Sbjct: 96 HRDM 99
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 29.5 bits (63), Expect = 6.2
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 313 QMQATLDHHLKAACDMTEVGETASRVESLIQEAHNFEKLCNCDLDTASSVIDDGDKLMQD 372
Q+ A L L+ + E + R E+ +QE + E + D + DD + M +
Sbjct: 260 QLLAQLQQELQVVPALHEEPQDDDRSENAVQELSSSEANTSSD-NNEPLAADDSAECMNE 318
Query: 373 PLSSVDHIE 381
PL VD IE
Sbjct: 319 PLPIVDGIE 327
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 120 IHAVYVLRPSSFLQKALSEVSSKLFKEEFRFKVLVCSTVDELYEHFERSQLT-PD 173
+HA+YVL P+ L+ A+ + + E ++ KV+ + L+ + R QLT PD
Sbjct: 516 LHAIYVLHPTLGLRTAILAMQMFVDGEVWK-KVVYVDRLVHLFRYVPREQLTIPD 569
>09_02_0531 + 10312743-10313293,10314313-10315030
Length = 422
Score = 29.5 bits (63), Expect = 6.2
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 166 ERSQLTPDLGGELQYSHSEWIQQRIALE-KFSTLMKETS--TKLDDF-MHEIVD 215
ER ++ LG L+Y H EW Q + + K S +M ++S TKL DF + +VD
Sbjct: 183 ERYKIIMGLGAALRYLHQEWEQCILHGDIKPSNIMVDSSYNTKLGDFGLARLVD 236
>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
Length = 685
Score = 29.5 bits (63), Expect = 6.2
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 166 ERSQLTPDLGGELQYSHSEWIQQRIALE-KFSTLMKETS--TKLDDF-MHEIVDCDMGND 221
ER ++ LG L Y H EW Q + + K S +M ++S TKL DF + +V D G
Sbjct: 453 ERYKIIIGLGSALHYLHQEWEQCVVHGDIKPSNIMLDSSYNTKLGDFGLARLV--DHGAK 510
Query: 222 PTQTKELLDCQG 233
TK +L G
Sbjct: 511 SRTTKVVLGTAG 522
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 361 SVIDDGDKLMQDPLSSVDHIESKCEELRRTSALLIDKIQKRNLLLTKARELMDRIDKAN 419
S+ +D DK +D LS IE++ L+ L ++ ++ ++TK + + + ID+ N
Sbjct: 511 SLTNDTDKASRDRLS---RIEAELSLLKEKQKDLTEQWEREKSVMTKIQSIKEEIDRVN 566
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,490
Number of Sequences: 37544
Number of extensions: 493364
Number of successful extensions: 1405
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 13
length of query: 480
length of database: 14,793,348
effective HSP length: 85
effective length of query: 395
effective length of database: 11,602,108
effective search space: 4582832660
effective search space used: 4582832660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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