GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002692-TA|BGIBMGA002692-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (480 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    36   0.002
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    29   0.21 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   0.36 
AF487533-1|AAL93294.1|  531|Anopheles gambiae cytochrome P450 CY...    26   1.9  
AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse t...    26   2.6  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 308 LLNFKQMQATLDHHLKAACDMTEVGETASRVESLIQEAHNFEKLCNCDLDTASSVIDDGD 367
           +   K  +  +   LK     T      + VES I+   N  K    DL+T+   I++ D
Sbjct: 684 MAQLKLQKEKITEELKEVMKKTRRQGELTTVESQIRGLENRLKYSMNDLETSKKNINEYD 743

Query: 368 KLMQDPLSSVDHIESKCEELRRTSALLIDKIQKRNLLLTKARELMDRI--DKANEWCA 423
           + ++D    +D I  K  E+ R       ++Q+R++ +   +E M+ +  D   E+CA
Sbjct: 744 RQLEDFTRELDQIGPKISEIER-------RMQQRDMKIQDIKESMNNVEDDVYAEFCA 794


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 204  TKLDDFMHEIVDCDMGN--DPTQTKELLDCQGTRYKALKSELSIATTQGEDLLTQVRKPN 261
            TK D FMH +VD    +  +  Q  +LLD    +   L  E ++  TQ  +L+       
Sbjct: 1668 TKSDMFMH-LVDQKNNSVLEVHQVLQLLDTHVEKLDRLFKEFNVLDTQASELVQTAEMDE 1726

Query: 262  LTYNII 267
            L+ NII
Sbjct: 1727 LSVNII 1732


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 237 KALKSELSIATTQGEDLLTQVRKPN-LTYNIISHVAAVERLLVQLEETEKQFDNFWQK-- 293
           K +K ++S      +DL   + K   L   I  H  + E+L VQ++E  K F    +K  
Sbjct: 404 KQIKDKISHQNKLQDDLKKDIAKQGELEKKIQEHTESFEQLRVQIDEHNKNFYELKKKKD 463

Query: 294 HSTKLNH--WLK---FRTFLLNFKQMQATLDHHLKAACDMTEV-GETASR--VESLIQEA 345
           H   L +  W K       L  +K+  A  D  L++      + G  + R  +ES +Q  
Sbjct: 464 HYQSLRNDIWKKETAVTQTLSGYKEELARADQALRSMAGKPILNGRDSVRKVLESFLQRG 523

Query: 346 HNFEKLCN 353
             +  + N
Sbjct: 524 REYADIAN 531


>AF487533-1|AAL93294.1|  531|Anopheles gambiae cytochrome P450
           CYP9K1 protein.
          Length = 531

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 198 LMKETSTK-LDDFMHEIVDCDMGNDPTQTKELLDCQGTRYKALKSELSIATT 248
           L+K+   K  D F++  +  D  +DP   + L   + TR++ +++ LS A T
Sbjct: 97  LVKQICIKDFDHFVNHRIQLDENHDPLFGRALFAMRDTRWRNMRTILSPAFT 148


>AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 134

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 262 LTYNIISHVAAVERLLVQLEETEKQFDNFWQKHSTKLNHWLKFRTFLLN 310
           +T NI+ +    +   + L +TEK FD+ W +        L F ++L+N
Sbjct: 53  VTNNIVHNRCNRKSTGLALLDTEKAFDSIWHQGLLSKLIKLNFPSYLIN 101


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,824
Number of Sequences: 2123
Number of extensions: 17839
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 5
length of query: 480
length of database: 516,269
effective HSP length: 67
effective length of query: 413
effective length of database: 374,028
effective search space: 154473564
effective search space used: 154473564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)