GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002691-TA|BGIBMGA002691-PA|undefined
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    30   0.99 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    29   1.7  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    29   2.3  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    28   3.0  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   7.0  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    27   9.2  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 293 HATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQGDSRKHLFEAYKEYGEILEPG 349
           H++  L+ + K H  + K+ +PS    K S  +    D    LF+ Y ++G +L  G
Sbjct: 258 HSSLDLRRFFKSHQKTDKEKKPSVSKSKSSANL---QDDHFGLFKKYGKFGRMLGSG 311


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/47 (21%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 190 YRHRLNIAELTKSEHDMYLMGITMASLANPAETSRHKVRRRLRACYV 236
           ++H   +++   SE  ++  GI +  +A+P     H++ + L +C++
Sbjct: 163 FQHEFTVSKYASSEESIWSAGIAIPEIAHPPSYD-HRLHQSLLSCFL 208


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/66 (28%), Positives = 25/66 (37%)

Query: 253 VTHYQLKRIRQHVMTHGVAPRIHGNVGKKPYNTFTLDIYKHATNFLKEYLKQHANSPKDV 312
           V+HY + R+ Q   + G         G       T +  +      KE L  H NS  DV
Sbjct: 305 VSHYSIDRVLQATKSIGWTKLTGAGGGGCTITLLTPECKEEEFKLCKESLLAHKNSIYDV 364

Query: 313 QPSGEG 318
           Q  G G
Sbjct: 365 QLGGPG 370


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 82  NGHQEQVLWQGHTIQVENGNPNLTNMQGQYTIEFEP 117
           N + ++V+W+     +  G+P+L N   ++++E +P
Sbjct: 71  NPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELDP 106


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 37  IIVSIPSDQNGGGEYGENAQWHTPVMGQHSVFEMGAPQNIQQHTYNGHQEQVLWQGHTIQ 96
           ++ + P D++ G +     +W   +  +H++F   A + +  H    +   + +QG  I+
Sbjct: 101 VLYATPVDKHNGNDLQAFCEWLKVIFTEHNLFTKDA-RPLTLHCTLLNSRYIKYQGRRIR 159

Query: 97  VENGNP 102
             N  P
Sbjct: 160 FFNSEP 165


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 146 ADSDSDEEVLDNKLEDNPTQVKERLRR 172
           +DSDSDE   +  L+ +  +VK+RL+R
Sbjct: 161 SDSDSDEAPEEVSLKSSSDEVKKRLQR 187


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,218
Number of Sequences: 5004
Number of extensions: 87405
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 6
length of query: 566
length of database: 2,362,478
effective HSP length: 76
effective length of query: 490
effective length of database: 1,982,174
effective search space: 971265260
effective search space used: 971265260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)