GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002691-TA|BGIBMGA002691-PA|undefined
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846...    33   0.61 
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910...    30   4.3  
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529...    29   9.9  

>09_05_0015 -
           20083143-20083308,20083645-20084017,20084362-20084675,
           20085164-20085512,20085678-20085837,20086307-20086618,
           20086700-20086820,20087225-20087277
          Length = 615

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 196 IAELTKSEHDMYLMGITMASLANPAETSRHKVRRRLRACYVYQGRKVCLEAFLYLENVTH 255
           + E+T+   D   +G+ + +L    E + + VR+ L+      G K          N  +
Sbjct: 93  LQEITELREDYRSVGLDLVTLLKFVELNANAVRKILKKFDERLGYKFTDYYVRSRSNHPY 152

Query: 256 YQLKRIRQHVMTHGVAPRIHGNVGKK----PYNTFTLDIYKHATNFLKEYLKQHA 306
            QL+++ +HV+   +   +   + KK       T T D   ++TNFL+ +L QHA
Sbjct: 153 SQLQQVFRHVLLTTIIDLVISELLKKDPIIDLITATADKLTNSTNFLR-FLGQHA 206


>09_03_0038 +
           11790075-11790302,11790397-11790542,11790915-11791017,
           11791148-11791334,11791466-11791559,11791702-11791855,
           11792189-11792305,11792695-11792808,11793629-11793811,
           11794209-11794494,11794592-11794713,11794746-11794802,
           11794803-11794900,11795036-11795213,11795355-11795455,
           11795530-11795629,11795751-11795828,11796785-11796862,
           11796956-11797138
          Length = 868

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 265 VMTHGVAPRIHGNVGKKPYNTFTLDIYKHATNFLKEYLKQHANSPK 310
           V + G   R++  VGK     F LDI   + NF K+Y       PK
Sbjct: 218 VTSEGNKVRVYTQVGKSSQGKFALDIGVKSLNFYKDYFDTPYPLPK 263


>04_04_0417 -
           25052305-25052398,25052583-25052672,25052740-25052905,
           25053547-25053647,25053735-25053775,25054170-25054181
          Length = 167

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 291 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 328
           Y+   N +  Y K+H+N P  + P    K+G   II Q
Sbjct: 98  YQRQVNLVAGYEKRHSNIPAHISPCFRVKEGDHVIIGQ 135


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,491,816
Number of Sequences: 37544
Number of extensions: 546540
Number of successful extensions: 1128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 3
length of query: 566
length of database: 14,793,348
effective HSP length: 86
effective length of query: 480
effective length of database: 11,564,564
effective search space: 5550990720
effective search space used: 5550990720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)