GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002691-TA|BGIBMGA002691-PA|undefined
         (566 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   4.1  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   4.1  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 42  PSDQNGGGEYGENAQWHTPVMGQHSVFE 69
           PS  +G G +G + Q H P+   HS  E
Sbjct: 408 PSSLSGTGPFGGSCQIHGPIQLPHSESE 435


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 42  PSDQNGGGEYGENAQWHTPVMGQHSVFE 69
           PS  +G G +G + Q H P+   HS  E
Sbjct: 408 PSSLSGTGPFGGSCQIHGPIQLPHSESE 435


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,100
Number of Sequences: 2123
Number of extensions: 19439
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 2
length of query: 566
length of database: 516,269
effective HSP length: 68
effective length of query: 498
effective length of database: 371,905
effective search space: 185208690
effective search space used: 185208690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)