Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002691-TA|BGIBMGA002691-PA|undefined
(566 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 34 0.23
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 34 0.23
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 34 0.23
AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 31 2.2
Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 8.8
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 8.8
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 34.3 bits (75), Expect = 0.23
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 148 SDSDEEVLDNKLEDNPTQVKERL--RRGCDCKDNCYRGLNPEAVYRHRLNIA-ELTKSEH 204
S SD +V D ++E P VK+R R + + GLNPE VY+ R+ I +L S+
Sbjct: 470 SVSDSDVSDFEVEVRPAIVKKRTFETRHVNMTYTTFIGLNPETVYQFRVRIRDDLRWSQP 529
Query: 205 DMYLMG 210
Y +G
Sbjct: 530 ISYQLG 535
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 34.3 bits (75), Expect = 0.23
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 148 SDSDEEVLDNKLEDNPTQVKERL--RRGCDCKDNCYRGLNPEAVYRHRLNIA-ELTKSEH 204
S SD +V D ++E P VK+R R + + GLNPE VY+ R+ I +L S+
Sbjct: 470 SVSDSDVSDFEVEVRPAIVKKRTFETRHVNMTYTTFIGLNPETVYQFRVRIRDDLRWSQP 529
Query: 205 DMYLMG 210
Y +G
Sbjct: 530 ISYQLG 535
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 34.3 bits (75), Expect = 0.23
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 148 SDSDEEVLDNKLEDNPTQVKERL--RRGCDCKDNCYRGLNPEAVYRHRLNIA-ELTKSEH 204
S SD +V D ++E P VK+R R + + GLNPE VY+ R+ I +L S+
Sbjct: 470 SVSDSDVSDFEVEVRPAIVKKRTFETRHVNMTYTTFIGLNPETVYQFRVRIRDDLRWSQP 529
Query: 205 DMYLMG 210
Y +G
Sbjct: 530 ISYQLG 535
>AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18 protein.
Length = 1456
Score = 31.1 bits (67), Expect = 2.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 48 GGEYGENAQWHTPVMGQHSVFEMGAPQNIQQHTYNGHQ 85
G G+ + WH P Q + APQ QQH +N Q
Sbjct: 1410 GFSMGQQSPWHNPPTQQQQLRGGQAPQQQQQHNHNMFQ 1447
>Z46793-4|CAA86773.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 29.1 bits (62), Expect = 8.8
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 232 RACYVYQGRKVCLEAFLYLENVTHYQLKRIRQHVMTHGVAPRIHGNVGKKPYNTFTLDIY 291
R C+ ++ +AF + NV + LK+ R H+ G +G + ++ + + +++
Sbjct: 519 RLCWKVSRDRLLDDAFRIILNVDPFVLKKSRLHIRFEGELALDYGGLSREFFILLSRELF 578
Query: 292 KHATNFLKEYLKQHANSPKDVQPSG-EGKKGSKTIIIQG 329
H N EY + + ++P G E +K K +I+ G
Sbjct: 579 -HPKNGYFEY--EGNDYHLQLRPRGCETEKEKKWLILCG 614
>Z34800-5|CAA84325.1| 889|Caenorhabditis elegans Hypothetical
protein F45H7.6 protein.
Length = 889
Score = 29.1 bits (62), Expect = 8.8
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 232 RACYVYQGRKVCLEAFLYLENVTHYQLKRIRQHVMTHGVAPRIHGNVGKKPYNTFTLDIY 291
R C+ ++ +AF + NV + LK+ R H+ G +G + ++ + + +++
Sbjct: 519 RLCWKVSRDRLLDDAFRIILNVDPFVLKKSRLHIRFEGELALDYGGLSREFFILLSRELF 578
Query: 292 KHATNFLKEYLKQHANSPKDVQPSG-EGKKGSKTIIIQG 329
H N EY + + ++P G E +K K +I+ G
Sbjct: 579 -HPKNGYFEY--EGNDYHLQLRPRGCETEKEKKWLILCG 614
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 29.1 bits (62), Expect = 8.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 69 EMGAPQNIQQHTYNGHQEQVLWQGHT-IQVENGNPNLTNMQGQYTIEFEPQVDGESG 124
E G P + Q Y G Q + +G+ I ENG P L GQ ++ E +DG+ G
Sbjct: 884 EDGFPGSPGQPGYPGQQGREGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPG 940
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.1 bits (62), Expect = 8.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 69 EMGAPQNIQQHTYNGHQEQVLWQGHT-IQVENGNPNLTNMQGQYTIEFEPQVDGESG 124
E G P + Q Y G Q + +G+ I ENG P L GQ ++ E +DG+ G
Sbjct: 1141 EDGFPGSPGQPGYPGQQGREGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPG 1197
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 8.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 69 EMGAPQNIQQHTYNGHQEQVLWQGHT-IQVENGNPNLTNMQGQYTIEFEPQVDGESG 124
E G P + Q Y G Q + +G+ I ENG P L GQ ++ E +DG+ G
Sbjct: 1140 EDGFPGSPGQPGYPGQQGREGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPG 1196
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,553,211
Number of Sequences: 27539
Number of extensions: 483392
Number of successful extensions: 1223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 16
length of query: 566
length of database: 12,573,161
effective HSP length: 85
effective length of query: 481
effective length of database: 10,232,346
effective search space: 4921758426
effective search space used: 4921758426
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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