GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002690-TA|BGIBMGA002690-PA|undefined
         (106 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    29   0.013
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   2.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   2.7  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    20   6.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 0.013
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 19  ASSGDWEKVHELIN-SKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDINGQ 77
           +SSG +  +   I+ SK    D W    +G+V  L P PG   +    YT  S    NG 
Sbjct: 83  SSSGPFSSIGGGISASKRQRTDDWLSSPSGNVPPLTPSPGPPSH---PYTVIS----NGY 135

Query: 78  KTD-KSGGHKIINDDGKVYEFDFNP-KVKGY 106
            +   SG +   + +GK+   D +P  + GY
Sbjct: 136 SSPMSSGSYDPYSPNGKIGREDLSPSSLNGY 166


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 62  GESEYTFHSSSDINGQKTDKSGG 84
           G  E T     D NG+K  K  G
Sbjct: 161 GSGEGTGEEDDDTNGKKNQKKRG 183


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 62  GESEYTFHSSSDINGQKTDKSGG 84
           G  E T     D NG+K  K  G
Sbjct: 317 GSGEGTGEEDDDTNGKKNQKKRG 339


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 55  IPGGHVYGESEYTFHSSSDINGQKTDKSGGHKIIN 89
           IPGG +  E+   +   +D   Q+  ++    ++N
Sbjct: 208 IPGGGIAAENSPLYWGGADTPWQREYENVNSTVVN 242


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,038
Number of Sequences: 317
Number of extensions: 1262
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 106
length of database: 114,650
effective HSP length: 49
effective length of query: 57
effective length of database: 99,117
effective search space:  5649669
effective search space used:  5649669
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)