Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002690-TA|BGIBMGA002690-PA|undefined
(106 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 31 0.051
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 29 0.21
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca... 28 0.27
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 28 0.36
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 0.36
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 27 0.63
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 1.5
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 25 1.9
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 1.9
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 24 4.5
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 24 4.5
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 30.7 bits (66), Expect = 0.051
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 31 INSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDINGQKTDKSGGHKI 87
+N ++ +D W ++AG+ + P +VY + SSS GQK KS G+ I
Sbjct: 201 VNLQIGGSDQWGNITAGTDLVRRTHPNANVYALTTPLLTSSS---GQKLGKSAGNAI 254
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 28.7 bits (61), Expect = 0.21
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 13 DELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSS 72
DEL+ +S ++ +IN L + + + +SA S+ + YG T+H
Sbjct: 356 DELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKSQA-----AYGHGSVTYHEVP 410
Query: 73 DINGQKTDKSGGHKIINDDGKV 94
N T S G+ I + G++
Sbjct: 411 RYN--LTSASVGYSISSQRGRI 430
>SPBC336.13c |||mitochondrial inner membrane peptidase complex
catalytic subunit 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 28.3 bits (60), Expect = 0.27
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 51 SLKPIPGGHVYGESEYTFHS 70
SL P+P GHV+ E + FHS
Sbjct: 111 SLVPVPEGHVWVEGDEQFHS 130
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 27.9 bits (59), Expect = 0.36
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 11 IGDELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLK 53
IGD F + + H +IN+KL++++ K V SVKS+K
Sbjct: 281 IGDVCFSMPRKLNKDGAHRIINAKLSKDEDAKLVE--SVKSIK 321
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 0.36
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 12 GDELFDAASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSS 71
G + D D+ + S NE DS+ SA IP G V+ ++Y H
Sbjct: 967 GKDSTDVHLPTDFSASSSPLRSYFNEEDSFNNASAAHSSKESDIPSGGVF--TKYRNHFG 1024
Query: 72 SDINGQKT---DKSGGHKIIND 90
+ + ++T D + HK ++D
Sbjct: 1025 NLMTSEETKAPDNNDLHKRLSD 1046
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 27.1 bits (57), Expect = 0.63
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 25 EKVHELINSKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSS 72
EK ELI +K N + S + +GS K + + GHV FH+SS
Sbjct: 543 EKAPELILNKSNASVSTIELFSGSSKEIVRL-AGHVVFVGPSVFHASS 589
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 1.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 24 WEKVHELINSKLNENDSWKP 43
W +V EL+NS+L + W P
Sbjct: 288 WGRVQELLNSQLQPAEIWLP 307
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 1 MGISTVPSFPIGDELFDAASSGDWEKVHELINSKLNENDSWK 42
+ + P + + FD + E++ EL+NS L+E + K
Sbjct: 538 VNVPVKPKYSSQETAFDTGAPISEEQIEELLNSGLDEQEGEK 579
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 1.9
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 37 ENDSWKPVSAGSVKSLKPIPGGHVYGESEYTFHSSSDINGQKTDKSGGHKIINDDG 92
END KP+++ K+ ++G + + +D++G ++ ++ IN DG
Sbjct: 309 ENDPTKPLTSSKSKNRTSKELDDLFGSDDEQSQNVNDLDGNSANEE--NEFINHDG 362
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 4.5
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 19 ASSGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGG 58
A +W+K + IN ++ D+W+ G V++ + + GG
Sbjct: 9 AEETEWDKYNRQINKNPDDFDAWE----GLVRASEHLEGG 44
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 24.2 bits (50), Expect = 4.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 13 DELFDAAS-SGDWEKVHELINSKLNENDSWKPVSAGSVKSLKPIPGG 58
DE++ + S S E +L+N + EN+S++ S +KS K + G
Sbjct: 466 DEIYMSTSVSPSIEGRAKLLNENMRENNSFELSSEKDIKSPKRLKRG 512
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.133 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,141
Number of Sequences: 5004
Number of extensions: 24727
Number of successful extensions: 59
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 11
length of query: 106
length of database: 2,362,478
effective HSP length: 63
effective length of query: 43
effective length of database: 2,047,226
effective search space: 88030718
effective search space used: 88030718
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 48 (23.4 bits)
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