GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002690-TA|BGIBMGA002690-PA|undefined
         (106 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    28   0.082
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    24   1.3  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    24   1.3  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    24   1.3  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   1.8  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   1.8  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 0.082
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 33  SKLNENDSWKPVSAGSVKSLKPIPGGHVYGESEYTF 68
           S+ NEN S    S G  +SLKP P G V   SE++F
Sbjct: 234 SRKNENCS---SSGGQRESLKPKPKGKVAKSSEFSF 266


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
          protein protein.
          Length = 695

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)

Query: 30 LINSKLNENDSWKPVSAGSVKSLKP 54
          L N K      WKP S GSVK   P
Sbjct: 42 LTNDKATLIQVWKPKSYGSVKGQIP 66


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
          protein protein.
          Length = 695

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)

Query: 30 LINSKLNENDSWKPVSAGSVKSLKP 54
          L N K      WKP S GSVK   P
Sbjct: 42 LTNDKATLIQVWKPKSYGSVKGQIP 66


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
          protein protein.
          Length = 673

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)

Query: 30 LINSKLNENDSWKPVSAGSVKSLKP 54
          L N K      WKP S GSVK   P
Sbjct: 20 LTNDKATLIQVWKPKSYGSVKGQIP 44


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 69   HSSSDINGQKTDKSGGHKIINDDGKVYEFDF 99
            H+S+D+   K D +G H+      + Y  ++
Sbjct: 2407 HNSADVQSYKIDANGNHQHFYTGFRRYRLEY 2437


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 69   HSSSDINGQKTDKSGGHKIINDDGKVYEFDF 99
            H+S+D+   K D +G H+      + Y  ++
Sbjct: 2408 HNSADVQSYKIDANGNHQHFYTGFRRYRLEY 2438


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.309    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,594
Number of Sequences: 2123
Number of extensions: 5147
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 106
length of database: 516,269
effective HSP length: 56
effective length of query: 50
effective length of database: 397,381
effective search space: 19869050
effective search space used: 19869050
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)