GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002689-TA|BGIBMGA002689-PA|undefined
         (71 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    23   6.5  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    22   8.6  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   8.6  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 13   DDIKTHVAGDNEQYTGEXXXXXXXXXTVNGKTVSSGGVSEL 53
            DD+KT     +  YT             + K   S G++ L
Sbjct: 986  DDVKTASTSSSTSYTSSSSSSSSTTSAASSKASVSMGLNGL 1026


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 571

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 41 NGKTVSSGGVSELTNDGKAV 60
          +G +V SG    + NDGK++
Sbjct: 28 SGSSVKSGSPWSIKNDGKSI 47


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 340

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 46 SSGGVSELTNDGKAVEEKVMEYK 68
          S G  SEL+ND + V  + + YK
Sbjct: 8  SGGSYSELSNDCETVNFRGIAYK 30


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.302    0.127    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,051
Number of Sequences: 5004
Number of extensions: 7820
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 2,362,478
effective HSP length: 51
effective length of query: 20
effective length of database: 2,107,274
effective search space: 42145480
effective search space used: 42145480
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
S2: 45 (22.2 bits)