GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002689-TA|BGIBMGA002689-PA|undefined
         (71 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1153 - 10842259-10842390,10843348-10845315                       27   2.4  
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624...    26   3.2  
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582...    26   4.3  
01_05_0415 - 21940466-21941536                                         25   7.5  
03_01_0266 - 2057354-2057638,2057762-2058022,2058342-2058778,205...    25   9.9  

>07_01_1153 - 10842259-10842390,10843348-10845315
          Length = 699

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 39 TVNGKTVSSGGVSELTN 55
          T++G T++SGG+ ELTN
Sbjct: 41 TMDGATITSGGLLELTN 57


>01_01_0802 +
           6246267-6247541,6247625-6247682,6247806-6248129,
           6248321-6248355
          Length = 563

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 5   PEIKSLEFDDIKTHVAGDNEQYTG 28
           PE +S++ +  K + A DNE+Y G
Sbjct: 429 PEPESIDIEPPKENTADDNERYVG 452


>05_02_0030 +
           5826065-5826092,5826307-5828309,5828412-5828732,
           5828821-5828907,5828981-5829583,5829680-5829844,
           5829941-5830235,5830320-5830534,5830621-5830926,
           5831200-5831263,5831384-5831623,5831756-5831853
          Length = 1474

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 41  NGKTVSSGGVSELTNDGKAVEEKVMEYKD 69
           NG+    G  SEL   G A E+ V  +KD
Sbjct: 817 NGEITQEGTYSELLQSGTAFEQLVNAHKD 845


>01_05_0415 - 21940466-21941536
          Length = 356

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 6   EIKSLEFDDIKTHVAGDNEQYTGEXXXXXXXXXTVNGKTVSSGGVSELTNDGKAVEE 62
           E+  +  D+I  H+ G +E Y G           V+G   +  G+  L   G  ++E
Sbjct: 260 ELARVRLDEIAFHLLGTDETYDGYKEEDALAVDPVSG---AQAGIGVLGGSGADLQE 313


>03_01_0266 -
           2057354-2057638,2057762-2058022,2058342-2058778,
           2058889-2059213
          Length = 435

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 7   IKSLEFDDIKTHVAGDNE 24
           +KSL+ DD+ TH+  +N+
Sbjct: 153 LKSLDVDDVSTHMHTENQ 170


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.302    0.127    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,754
Number of Sequences: 37544
Number of extensions: 54745
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 5
length of query: 71
length of database: 14,793,348
effective HSP length: 51
effective length of query: 20
effective length of database: 12,878,604
effective search space: 257572080
effective search space used: 257572080
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
S2: 51 (24.6 bits)