GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002689-TA|BGIBMGA002689-PA|undefined
         (71 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.21 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   2.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   2.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   2.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   2.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   4.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.21
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 2   PEMP-EIKSLEFDDIKTHVA-GDNEQYTGE 29
           PE+  E++ +E+DDIKT ++ G N+    E
Sbjct: 290 PEIKKEVEDMEYDDIKTELSTGMNDDIPPE 319


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 43  KTVSSGGVSELTNDGKAVEE 62
           K  S GG  E T +G+A EE
Sbjct: 359 KAHSKGGTLENTINGRADEE 378


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 43  KTVSSGGVSELTNDGKAVEE 62
           K  S GG  E T +G+A EE
Sbjct: 359 KAHSKGGTLENTINGRADEE 378


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 6/13 (46%), Positives = 12/13 (92%)

Query: 11  EFDDIKTHVAGDN 23
           ++D+I+ +V+GDN
Sbjct: 178 KYDNIQVNVSGDN 190


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 43  KTVSSGGVSELTNDGKAVEE 62
           K  S GG  E T +G+A EE
Sbjct: 297 KAHSKGGTLENTINGRADEE 316


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 5   PEIKSLEFDDIKTHVAGDNEQY 26
           PE+K L++D  K  VA +   Y
Sbjct: 157 PELKLLQYDIGKPVVAEETVDY 178


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 14   DIKTHVAGDNEQYT 27
            D++ HV G++E  T
Sbjct: 1194 DVRVHVPGESESET 1207


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 54  TNDGKAVEEKVMEYKDGD 71
           + D   V + +++YK+GD
Sbjct: 932 SQDTTEVTKYILQYKEGD 949


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 54  TNDGKAVEEKVMEYKDGD 71
           + D   V + +++YK+GD
Sbjct: 928 SQDTTEVTKYILQYKEGD 945


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.302    0.127    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,891
Number of Sequences: 429
Number of extensions: 477
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 140,377
effective HSP length: 45
effective length of query: 26
effective length of database: 121,072
effective search space:  3147872
effective search space used:  3147872
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (18.7 bits)
S2: 36 (18.6 bits)