GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002688-TA|BGIBMGA002688-PA|undefined
         (62 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77660-8|CAB01178.2|  193|Caenorhabditis elegans Hypothetical pr...    27   1.6  

>Z77660-8|CAB01178.2|  193|Caenorhabditis elegans Hypothetical
          protein F38H4.10 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 37 CDPLASDSLGNGNTRQAL 54
          C+P+A  +LG+GN R AL
Sbjct: 9  CNPMAVSTLGSGNLRDAL 26


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.311    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,842
Number of Sequences: 27539
Number of extensions: 27901
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 1
length of query: 62
length of database: 12,573,161
effective HSP length: 42
effective length of query: 20
effective length of database: 11,416,523
effective search space: 228330460
effective search space used: 228330460
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)