GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002687-TA|BGIBMGA002687-PA|undefined
         (170 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   4.1  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   4.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   4.1  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 89  NASNDKKAKMQEQLRTIRLLFKRLRLIY 116
           +A+ +  AK   Q+R IR   KRLR  Y
Sbjct: 267 DANRNDCAKPLTQIRNIRGPRKRLRFAY 294


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 118 KCNETCQGMEYTHMESLI 135
           K  + CQ ++  H ES+I
Sbjct: 307 KVKDFCQNLDKAHQESII 324


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 108 LFKRLRLIYEKCN-ETCQGME 127
           LF  L LI+EKC   TC   E
Sbjct: 85  LFPLLALIFEKCELATCTPRE 105


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,897
Number of Sequences: 317
Number of extensions: 966
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 114,650
effective HSP length: 53
effective length of query: 117
effective length of database: 97,849
effective search space: 11448333
effective search space used: 11448333
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)