GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002687-TA|BGIBMGA002687-PA|undefined
         (170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    33   0.030
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    29   0.28 
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    29   0.37 
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   1.1  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   1.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   4.5  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   6.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.0  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 32.7 bits (71), Expect = 0.030
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 89  NASNDKKAKMQEQLRTIRLLFKRLRLIYEKCNETCQGMEYTHMESLIPLKDEAEN-KTLD 147
           NA  +K AK   QL+     F  L   ++K NE+ Q +E  H      LKD +   + L 
Sbjct: 584 NAFQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQ 643

Query: 148 -ERRNTESYRLAL-EENTEL 165
            ER N E     L +EN +L
Sbjct: 644 LERANFEQKESTLSDENNDL 663


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 110 KRLRLIYEKCNETCQGMEYTHMESLIPLKDEA 141
           K +R++ E C+  C G+ Y  ++S+ P + EA
Sbjct: 339 KAMRMLNEICSGICDGLTYEEIKSIYPKEYEA 370


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 119 CNETCQGMEYTHMESLIPLKDEAENKTLDERRN 151
           C ETC+G+++ H  ++I    +++N  LD   N
Sbjct: 415 CLETCKGIQHLHARNIIHRDIKSDNVLLDNSGN 447


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 78   PQPPNGTQHGENASNDKKAKMQEQLRTIRLLFKRLRLIYEKCNETCQGMEYTHMESLIPL 137
            P   N  Q+ E   N +K ++ +   TI+ +       Y+      + M+Y   + LI  
Sbjct: 1054 PLSLNDKQNNEGDENCEKGQLFDAKSTIKSIVAIPDATYDARFSQERLMQYPE-DILIAA 1112

Query: 138  KDEAENKTLDERRNTESYRLALEENTELTEQ 168
              E  +K +  R N+E+ RL    N + TE+
Sbjct: 1113 HQELLDKRIITRVNSENSRLQPGRNFQFTEK 1143


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 78  PQPPNGTQHGENASNDKKAK-MQEQLRTIRLLFKRLRLIYEKCNETCQGMEYTHMESLIP 136
           P  P  T     +S       +++  +  R L + + L+Y  C  +  G  + H    IP
Sbjct: 8   PASPKPTSRSRESSRSPSVTDLKDHSKAKRTLCRNI-LLYGSCKHSENGCAFRHDGPFIP 66

Query: 137 LKDEAENKTLDERRNTES 154
             +  E  ++ ++ N  S
Sbjct: 67  SSENLEQYSVKKKLNAAS 84


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 98   MQEQLRTIRLLFKRLRLIYEKCNETCQGMEYTHMESLIPLKDEAENKTLD 147
            M+ +  T+ +  K +     KCN   + + YT ++ +   K+E    T++
Sbjct: 1213 MEREDHTLPIPIKVISAHASKCNVYAKALHYTELQFVQETKEEVSISTIE 1262


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 19/75 (25%), Positives = 33/75 (44%)

Query: 95  KAKMQEQLRTIRLLFKRLRLIYEKCNETCQGMEYTHMESLIPLKDEAENKTLDERRNTES 154
           + K QEQ   +  L+K+L+ I E        ME    E +  L++  E  T + +   E 
Sbjct: 495 RMKTQEQSIELTRLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKEV 554

Query: 155 YRLALEENTELTEQV 169
              + +E+ +  E V
Sbjct: 555 LSKSSKESDDYEEVV 569


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 120 NETCQGMEYTHMESLIPLKDEAENKTLDERR-NTESYRLALEENTELTEQV 169
           N   +G++YT + S IPL++  +N      +   E  +L  EE++ +   V
Sbjct: 13  NRIIKGLQYTPLASSIPLENGLQNVLYPSSKFQNEPLQLNSEESSIMQRYV 63


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,517
Number of Sequences: 5004
Number of extensions: 19249
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 8
length of query: 170
length of database: 2,362,478
effective HSP length: 68
effective length of query: 102
effective length of database: 2,022,206
effective search space: 206265012
effective search space used: 206265012
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)