GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002687-TA|BGIBMGA002687-PA|undefined
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665...    29   2.0  
09_03_0175 - 13110771-13112240                                         29   2.6  
05_01_0465 + 3696440-3696730,3698758-3699282                           28   3.4  
08_02_1030 - 23786760-23787812,23787891-23788319,23788410-237885...    28   4.6  
06_03_1477 + 30408296-30409123,30409227-30410264                       27   8.0  

>09_04_0727 + 19765175-19765384,19765523-19765595,19766476-19766570,
            19766666-19768450,19768533-19768721,19768816-19768958,
            19769075-19769320,19769975-19770059,19770117-19770191,
            19770304-19770369,19770466-19770712,19770824-19771242
          Length = 1210

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 81   PNGTQHGENASNDKKAKMQEQLRTIRLLFKRLRLIY--EKCNETCQGMEYTHMESLIPLK 138
            P  T +GENA+      + EQL  ++  F  L   Y   +    C  +    M+ +I L 
Sbjct: 1129 PMVTDNGENAAMPASDDIPEQLEVVKRRFMELTTGYGVPQLERLCTRV----MKGMIELS 1184

Query: 139  DEAENKTLDERRNTESYRLALEENTE 164
             +  N+  D RR    Y L   EN++
Sbjct: 1185 GKESNE--DHRRLVVRYLLTFVENSD 1208


>09_03_0175 - 13110771-13112240
          Length = 489

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 78  PQPPNGTQHGENASNDKKAKMQEQLRTIRL-LFKRLRLIYEKCNETCQGMEYTHMESLIP 136
           P PP+     E       A   + +RT R  L       Y           YT    +IP
Sbjct: 60  PAPPSADAAREAVLRAMPADAAKSVRTRRAALASSSNSSYSSPASAASTSSYTSSSEIIP 119

Query: 137 LKDEAENKTLDERRNTESYRLALEENTELTEQV 169
            +DE   K + E  N ++ R  +E   +  E V
Sbjct: 120 AEDEVGVKPVKEGTNKDAVREQVEMAVDPLEDV 152


>05_01_0465 + 3696440-3696730,3698758-3699282
          Length = 271

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 102 LRTIRLLFKRLRLIYEKCNETCQGMEYTHMESLIPLKDEAENKTLDERRNTESYRLALEE 161
           L  I   F+RLRL     + +C G    H   L   ++E E+   + R   E+ R AL +
Sbjct: 168 LADIAATFRRLRLRPLSADMSCLGGRTRHAFVLCREEEEEEDAAAEARPLKEAVRQALAK 227

Query: 162 NTELTEQVY 170
              L E VY
Sbjct: 228 -VALPETVY 235


>08_02_1030 -
           23786760-23787812,23787891-23788319,23788410-23788526,
           23788820-23789083
          Length = 620

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 111 RLRLIYEKCNETCQGMEYTHMESLIPLKDEAE 142
           R R +YEK N    GM Y+ +     +K++ E
Sbjct: 98  RFRAVYEKMNSALDGMPYSELAISDEVKEQVE 129


>06_03_1477 + 30408296-30409123,30409227-30410264
          Length = 621

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 111 RLRLIYEKCNETCQGMEYTHMESLIPLKDEAE------NKTLDERRNTESYRLALE 160
           R R +YEK N   +GM Y  +     +K++ E       K   +R  T+   LA++
Sbjct: 112 RFRGVYEKMNMALEGMPYAELGVSDEVKEQVELISAQLKKRSKKRTETQDMELAMD 167


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,671,964
Number of Sequences: 37544
Number of extensions: 111009
Number of successful extensions: 264
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 5
length of query: 170
length of database: 14,793,348
effective HSP length: 77
effective length of query: 93
effective length of database: 11,902,460
effective search space: 1106928780
effective search space used: 1106928780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)