GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002687-TA|BGIBMGA002687-PA|undefined
         (170 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical pr...    29   2.3  
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    29   2.3  
AL021492-4|CAA16384.1|  492|Caenorhabditis elegans Hypothetical ...    28   4.1  
AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical ...    27   7.1  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    27   9.4  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    27   9.4  
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    27   9.4  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    27   9.4  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    27   9.4  
AF078790-16|AAC26939.1|  190|Caenorhabditis elegans Hypothetical...    27   9.4  

>Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical
           protein R10E4.3 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 127 EYTHMESLIPLKDEAENKTLDERRNTESYRLALEENTELT 166
           E   +E L+PLK   E K   ++R T+    AL+E T +T
Sbjct: 157 ETAGIEYLVPLKRSKEEKEKKKKRKTKERMDALDELTRVT 196


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 68  QNQMGNMGIGPQPPNGTQ 85
           Q Q G   +GP+PPNG+Q
Sbjct: 569 QKQYGKKSMGPKPPNGSQ 586


>AL021492-4|CAA16384.1|  492|Caenorhabditis elegans Hypothetical
           protein Y45F10D.9 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 97  KMQEQLRTIRLLFKRLRLIYEKCNETCQGMEYTHMESLIPLKDEAENKTLDERRNTESYR 156
           K  E+L  ++  F+ +   +++  +  + ++    E++  L ++ E++  D +++TES +
Sbjct: 209 KQVEKLSGVKEEFEEMSEKFKELEDEVELVK-EERENIRLLVEDKEDEVADLKQDTESLQ 267

Query: 157 LALEENTELTEQV 169
             LEEN E  E V
Sbjct: 268 KQLEENQEELEIV 280


>AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51H1A.4 protein.
          Length = 490

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 83  GTQHGENASNDKKAKMQEQLRTIRLLFKRLRLIYEKCNETCQGMEYTHME---SLIPLKD 139
           G    E    ++   +QE+  TIR+L +R  LI EK  E  +  +  H+E   +    + 
Sbjct: 51  GVNMPEEQRKERCKVLQEEFSTIRVLAQRKYLIAEKMQELLKKYK-VHLEKEKTTFQCEM 109

Query: 140 EAENKTLDE 148
           EA+N  + E
Sbjct: 110 EADNSGVTE 118


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
            protein 70, isoform a protein.
          Length = 2257

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 130  HMESLIPLKDEAENKTLDERRNTESYRLALEENTE 164
            H++ L+ ++ + E    DE  N +++RLA++E  +
Sbjct: 1425 HIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQ 1459


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
            protein 70, isoform b protein.
          Length = 2302

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 130  HMESLIPLKDEAENKTLDERRNTESYRLALEENTE 164
            H++ L+ ++ + E    DE  N +++RLA++E  +
Sbjct: 1425 HIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQ 1459


>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
           protein Y43F4B.6 protein.
          Length = 1083

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 127 EYTHMESLIPLKDEAENKTLDERRN-TESYRLALEENTELTEQV 169
           E   +E  I +KDE   K LDE+R   E+ +    E T+L  ++
Sbjct: 493 ELDDLEKQIAMKDENRQKALDEQRAFIEAMQQRESEKTQLVVRI 536


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
            protein.
          Length = 2257

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 130  HMESLIPLKDEAENKTLDERRNTESYRLALEENTE 164
            H++ L+ ++ + E    DE  N +++RLA++E  +
Sbjct: 1425 HIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQ 1459


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
            protein.
          Length = 2257

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 130  HMESLIPLKDEAENKTLDERRNTESYRLALEENTE 164
            H++ L+ ++ + E    DE  N +++RLA++E  +
Sbjct: 1425 HIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQ 1459


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
            protein.
          Length = 2302

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 130  HMESLIPLKDEAENKTLDERRNTESYRLALEENTE 164
            H++ L+ ++ + E    DE  N +++RLA++E  +
Sbjct: 1425 HIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQ 1459


>AF078790-16|AAC26939.1|  190|Caenorhabditis elegans Hypothetical
           protein F36H12.17 protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 119 CNETCQGMEYTHMESLIPLKDEAENKTLDERRNTESYRLALEEN 162
           CN+T +G  Y HMES   ++ EA       R + ++++  + +N
Sbjct: 102 CNKTSKGKVYLHMES---IEKEAIGNLKLNRASRKAFKARITDN 142


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,860
Number of Sequences: 27539
Number of extensions: 110829
Number of successful extensions: 320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 11
length of query: 170
length of database: 12,573,161
effective HSP length: 76
effective length of query: 94
effective length of database: 10,480,197
effective search space: 985138518
effective search space used: 985138518
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)