GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002685-TA|BGIBMGA002685-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (124 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   0.49 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   1.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   1.5  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 24  KDTTWTKLFV--GGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMG--D 79
           KD+ WTK +   G +PY          +  Y D E   +  D    KS+GYG  +    D
Sbjct: 319 KDSGWTKKWDEHGKVPYAYKGNQ----WVGYEDPESVQIKMD--WIKSKGYGGAMTWAID 372

Query: 80  RTAAERACKDPNPIIDGRKANVN 102
                  C   NP+I+   AN+N
Sbjct: 373 MDDFHGLCGPKNPLINILYANMN 395


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 72  YGFVIMGDRTAAERACKDP---NPIIDGRKANVNLAIL 106
           Y F  + D   AE + KDP   + ++  R+ N +L IL
Sbjct: 556 YAFATLKDHKLAEASDKDPEMYDRVVALREKNPDLKIL 593


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory
          receptor candidate 57 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 46 REHFAVYGDIEEAVVITDRQTN 67
          RE+F +YG +   V ITD+  N
Sbjct: 47 RENF-IYGSMNMTVAITDKIAN 67


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,316
Number of Sequences: 317
Number of extensions: 1030
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 124
length of database: 114,650
effective HSP length: 50
effective length of query: 74
effective length of database: 98,800
effective search space:  7311200
effective search space used:  7311200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)