Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002685-TA|BGIBMGA002685-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(124 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 119 8e-28
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 3e-12
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 56 6e-09
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 53 6e-08
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 53 8e-08
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 52 1e-07
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 52 1e-07
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 51 2e-07
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 3e-07
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 49 1e-06
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 1e-06
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 5e-06
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 5e-06
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 46 7e-06
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 46 7e-06
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 44 3e-05
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 44 4e-05
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 44 5e-05
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 44 5e-05
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 43 8e-05
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 1e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 42 1e-04
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 42 2e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 3e-04
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 3e-04
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 40 8e-04
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 39 0.001
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 39 0.001
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 38 0.002
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 38 0.002
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 38 0.002
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 38 0.002
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.002
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.004
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.006
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.007
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 36 0.010
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.010
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.017
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 35 0.022
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 35 0.022
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 35 0.022
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 34 0.029
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.029
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.039
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 33 0.051
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 33 0.068
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.068
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 33 0.090
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.21
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 31 0.27
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 31 0.27
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 0.48
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.48
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.48
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.63
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.63
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.63
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 29 1.1
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 28 1.9
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_37509| Best HMM Match : PAE (HMM E-Value=0) 28 1.9
SB_5220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_59641| Best HMM Match : PAE (HMM E-Value=0) 28 1.9
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 28 1.9
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 28 2.6
SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4) 27 3.4
SB_4854| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 27 5.9
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_19637| Best HMM Match : Cullin (HMM E-Value=0) 27 5.9
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 26 7.8
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 26 7.8
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 119 bits (286), Expect = 8e-28
Identities = 55/88 (62%), Positives = 69/88 (78%)
Query: 24 KDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAA 83
+DT +TKLFVGG+PY + D +LR+ FA +G+I EAVVI DR T KS+GYGFV M AA
Sbjct: 5 QDTKFTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAA 64
Query: 84 ERACKDPNPIIDGRKANVNLAILGAKPR 111
E ACK+ P+I+GR+ANVNLA LGAKP+
Sbjct: 65 ELACKNKRPMIEGRQANVNLAYLGAKPK 92
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 67.3 bits (157), Expect = 3e-12
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 89
KLFVGGL TT+++LRE+F YG++ + VVI D T KSRG+G+V D KD
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKD 74
Query: 90 --PNPI--IDGRKANVNLAILGAKPRGNLAPDTNDNSSK 124
N IDG++ V AI PR + + +++ + K
Sbjct: 75 KVENGAHRIDGKEVEVKRAI----PRDDNSATSHEKTKK 109
Score = 34.3 bits (75), Expect = 0.029
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAV-----VITDRQTNKSRGYGFVIMGDRTAAE 84
K+FVGGLP T + ++E A+ +EE V ++ K RG+ FV + + A+
Sbjct: 109 KIFVGGLPEDATKEDIQE--AIESLLEEKVDKVDLIMKKEDETKHRGFAFVELNNEDQAD 166
Query: 85 RAC 87
C
Sbjct: 167 ELC 169
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 56.4 bits (130), Expect = 6e-09
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 24 KDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAA 83
KD KLFVGGL Y TT +SL+E+F+ YG++ + D T + RG+ FV ++ A
Sbjct: 24 KDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEA 83
Query: 84 ERACKDPNPIID-GRKANVNLAILGAKPRGNLAPDTND 120
+ DP P G+ ++ + + G L P+T+D
Sbjct: 84 DAI--DPKPAAPIGKPPHLRVKKIFV---GGLKPETSD 116
Score = 54.8 bits (126), Expect = 2e-08
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 30 KLFVGGLPYHTTDKSLREHFA-VYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
K+FVGGL T+D+ +RE+F Y ++E IT+ +N+ RG+ FV ++ C+
Sbjct: 104 KIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICE 163
Query: 89 DPNPIIDGRKANVNLAI 105
I+G K V A+
Sbjct: 164 TQFHNIEGNKVEVKRAL 180
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 53.2 bits (122), Expect = 6e-08
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 29 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
T+L+VG L ++ T+ ++ F +G ++ +I D +TN+S+GYGFV + AA+RA +
Sbjct: 242 TRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAME 301
Query: 89 DPN 91
N
Sbjct: 302 QMN 304
Score = 32.3 bits (70), Expect = 0.12
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 43 KSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA 86
+ L E F+ G + + +I+DR + +S+G ++ D++A A
Sbjct: 160 RDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLA 203
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 52.8 bits (121), Expect = 8e-08
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
+F+G LP+ ++ LRE F G++E +I DR+T +G+G+V+ + A A K
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMN 117
Query: 91 NPIIDGRKANV 101
N GRK V
Sbjct: 118 NAEFKGRKIRV 128
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 52.4 bits (120), Expect = 1e-07
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 22 GQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRT 81
G D + +FVG +PY +++ L+E F+ G + ++ DR+T K +GYGF D+
Sbjct: 18 GAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQE 77
Query: 82 AAERACKDPNPI-IDGRKANVNLA 104
A A ++ N ++GR V+ A
Sbjct: 78 TALSAMRNLNGYELNGRALRVDSA 101
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 52.4 bits (120), Expect = 1e-07
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYG-DIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
+ ++G L Y +++L E F +G D+ + VITDR+T + RG+GFV G + E+A
Sbjct: 6 RCYIGNLSYSVDEQALEEKF--HGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAID 63
Query: 89 D-PNPIIDGRKANVNLAILGAKPRG 112
+ DGR VN A+PRG
Sbjct: 64 EFDGQDFDGRPMKVN----QAQPRG 84
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 89
K+F+GGL ++TT++ L+++F+ +G I + V++ ++ +SRG+GFV + K
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIM--KRDGRSRGFGFVTYESSDSVNEVLKK 108
Query: 90 PNPIIDGRK 98
+ ++D R+
Sbjct: 109 KDHVLDDRE 117
Score = 31.5 bits (68), Expect = 0.21
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 30 KLFVGGLPYHTTDKSLREHFAV------YGDIEEAVVITDRQTNKS-RGYGFVIMGDRTA 82
K+FVGGL T ++ ++E+F G++ + + DR K RG+ FV +
Sbjct: 140 KIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEI 199
Query: 83 AERAC 87
E+ C
Sbjct: 200 VEKVC 204
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 50.8 bits (116), Expect = 3e-07
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA 86
++VG LPY T+ L + F YG + + ++ D++T +SRG F++ DR +A+ A
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNA 67
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 23 QKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTA 82
Q D ++F G L TD+SL FA Y +A ++ D+++NKS+GYGFV D
Sbjct: 211 QWDPNDFRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPND 270
Query: 83 AERACKDPN 91
+A ++ N
Sbjct: 271 FIKAMREMN 279
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 48.8 bits (111), Expect = 1e-06
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 89
K ++G L + + L++ F+ Y D+ + VI+DR+T + RG+ FV G + E A +
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINE 289
Query: 90 -PNPIIDGRKANVNLA 104
DGR VN A
Sbjct: 290 LDGQEFDGRSMKVNQA 305
Score = 39.5 bits (88), Expect = 8e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 60 VITDRQTNKSRGYGFVIMGDRTAAERAC-KDPNPIIDGRKANVNLAILGAKPRG 112
VITDR+T + RG+GFV G ++A K +DGR VN A+PRG
Sbjct: 40 VITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVN----KAQPRG 89
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 75
L V GLPY TT+ ++E+F +G+I+ V D T +SRG+GFV
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFV 161
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVV 60
KLFVG LP TT+K+L E+FA +G++ + +
Sbjct: 200 KLFVGRLPESTTEKTLMEYFAQFGEVTDVYI 230
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 46.8 bits (106), Expect = 5e-06
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 23 QKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTA 82
Q TT T+LFV P D+ LR F +GDIE ++ D +T +++GYG+V +
Sbjct: 48 QDQTTMTRLFVI-CPKDFNDEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSST 106
Query: 83 AERACKD 89
A A ++
Sbjct: 107 AAMALEN 113
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 46.8 bits (106), Expect = 5e-06
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 29 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA-- 86
T L V L Y TT + L++ F YGD+ + + DR T++SRG+ FV ++ AE A
Sbjct: 16 TSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMD 75
Query: 87 CKD 89
C D
Sbjct: 76 CMD 78
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 46.4 bits (105), Expect = 7e-06
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 29 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
TKL+V L + ++E F+VYG ++ + TDR N SRG+ +V D E+A K
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALK 1216
Query: 89 D-PNPIIDGRKANVNLAILGAKPR 111
IDG++ V ++L +PR
Sbjct: 1217 HMDGGQIDGQEIAVQ-SVLPPRPR 1239
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 46.4 bits (105), Expect = 7e-06
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 43 KSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPIIDGRK 98
+ LR+HF +G+++E VV+ D T +SRG+GF+ D A + +DG+K
Sbjct: 122 EGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKK 177
Score = 34.3 bits (75), Expect = 0.029
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 8 PAESDGLLALGA--LPGQKDTTWTK-LFVGGLPYHTTDKSLREHFAVYGDI 55
P D +L GA L G+K T TK +F+GGL +T+++ ++++F+ +G +
Sbjct: 159 PKAVDVVLNSGAQELDGKKMVTTTKKIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 45.6 bits (103), Expect = 1e-05
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 89
KL++G L +++ + + + F +G +E+ ++ D+++ +SRG+GFV++ A +
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 90 PN-PIIDGRKANVNLAILGAKPRG 112
N + GR V LA+ + RG
Sbjct: 69 MNQSSVGGRNITVALALDKTENRG 92
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 44.4 bits (100), Expect = 3e-05
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 29 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
+ LF+ LP TD L + F +G + A V D+QTN S+ +GFV + +A+ A +
Sbjct: 277 SNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQ 336
Query: 89 DPNPIIDGRK 98
N G K
Sbjct: 337 HMNGFQIGAK 346
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 44.0 bits (99), Expect = 4e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA 86
LFVG LP+ T+ + + YG+IE ++ T S+GYGFV R A +A
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQA 170
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 44.0 bits (99), Expect = 4e-05
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 22 GQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRT 81
G++ + T L++ GL +TTD L YG I I D+ TN +GYGFV
Sbjct: 93 GEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPI 152
Query: 82 AAERA 86
+A++A
Sbjct: 153 SAQKA 157
Score = 40.3 bits (90), Expect = 4e-04
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 23 QKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTA 82
Q++ T L++ LP + + L F+ YG + ++ D+ TN S+G GF M
Sbjct: 173 QQEQDPTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTN-SKGVGFARMESAEK 231
Query: 83 AERACKDPN 91
E+ KD N
Sbjct: 232 CEQVIKDFN 240
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 43.6 bits (98), Expect = 5e-05
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
LFVG LP+ T + + +HF G ++T + N S+G GF+ + D +A
Sbjct: 76 LFVGNLPFDLTTEKVLDHFRCAGS-SSFRLLTKKTDNSSKGCGFLEIDDSIGYTKALNLH 134
Query: 91 NPIIDGRKANVNLAILG 107
+ + GRK NV + G
Sbjct: 135 HSYLGGRKINVEVTCGG 151
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 43.6 bits (98), Expect = 5e-05
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 57 EAV-VITDRQTNKSRGYGFVIMGDRTAAERACKD-PNPIIDGRKANVNLAILGAKPRGN 113
EAV +ITDR+T + RG+GFV G + E+A + +DGR VN AKPRG+
Sbjct: 123 EAVNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVN----EAKPRGD 177
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 42.7 bits (96), Expect = 8e-05
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 20 LPGQKDTTWTK--LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIM 77
LP KD +FVGGL T ++ L+++F +G++ E+V I SR YGFV+
Sbjct: 69 LPSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFGEV-ESVRIMRTFLGYSRNYGFVLF 127
Query: 78 GDRTAAERACKDPNPIIDGRKANV 101
D ++ K + +I+G+ +V
Sbjct: 128 KDDGPSKEVLKKSH-VINGKTVDV 150
Score = 42.7 bits (96), Expect = 8e-05
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
LFV L T + + +F YG + + ++TDR+T KS+G G V + + ++P
Sbjct: 321 LFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEP 380
Query: 91 NPIIDGRKANVNLAILGAKPR 111
+I K+ V L G K R
Sbjct: 381 VHVIG--KSQVRLRRRGLKIR 399
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 24 KDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRG 71
K + ++VGGLP H T++++REHF +G IE I + G
Sbjct: 152 KSRNFRVIYVGGLPSHFTEQTVREHFKKFGVIEAVKFIENTSVGAKTG 199
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 42.3 bits (95), Expect = 1e-04
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 89
K+F+GGLP + + ++E + +G++ ++ D T S+GY F D + A +
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQG 733
Query: 90 PNPI-IDGRKANVNLAILGAKPRGN 113
N + + +K V A +GAK N
Sbjct: 734 LNGMQLGDKKLIVQRASVGAKQNLN 758
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 42.3 bits (95), Expect = 1e-04
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 29 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQT-NKSRGYGFVIMGDRTAAERAC 87
T +FV LPY+ TD + F G ++ ++ D+ N+ RG+G+V A +A
Sbjct: 20 TTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKA- 78
Query: 88 KDPNPIIDGRKANVNLAILGAKPRGNLAPDTNDNSSK 124
KD I GR ++L K R + +N+S+
Sbjct: 79 KDNIKSIKGRP--IHLDFSEKKARTKPGREGTENASQ 113
Score = 37.5 bits (83), Expect = 0.003
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 24 KDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDR--QTNKSRGYGFVIMGDRT 81
K + ++L + L ++ T+ L+E F+ +G++ EA V + + N+ G+GFV +
Sbjct: 242 KGSKKSRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVF 301
Query: 82 AAERACKDPN-PIIDGRKANVNLAI 105
A +A ++ N I GR V+ A+
Sbjct: 302 DAAKALEEMNAKKILGRPVAVDWAV 326
Score = 36.7 bits (81), Expect = 0.006
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAER--ACK 88
+F+ L + +T K++ F +GDI V+ D T S+G FV + + A
Sbjct: 418 VFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAAT 477
Query: 89 DPNP---IIDGRKANVNLAILGAK 109
D + +DG + V+LA+ K
Sbjct: 478 DEDSEGLFLDGNRLQVDLAVTPGK 501
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 32 FVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPN 91
+VGGL +K L F +GDI + + D T+K RG+GFV A + N
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 92 PI-IDGRKANVNLA 104
+ GR VNLA
Sbjct: 68 ESELFGRTIRVNLA 81
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 21 PGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDR 80
PG +T L+V +P + R+ F YG+I ++ D+ T +G GFV+ +
Sbjct: 125 PGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKK 184
Query: 81 TAAERA 86
A+ A
Sbjct: 185 AEAQAA 190
Score = 35.1 bits (77), Expect = 0.017
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 21 PGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDR 80
P + + T L V +P TD++ R F + ++ + + S G+GFV
Sbjct: 39 PQEAQESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTT 98
Query: 81 TAAERACKDPNPIIDGRKANVNLAILGAKPRGNLAPDTN 119
A++A N G K L + ++P G+ N
Sbjct: 99 EDAQKAIDKLNGFTIGNKV---LKVAFSRPGGDNTKGAN 134
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
L+V + Y + + F G + + ++ D Q + +G+ FV M + A+ A +
Sbjct: 277 LYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTL 336
Query: 91 N 91
N
Sbjct: 337 N 337
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 40.7 bits (91), Expect = 3e-04
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 29 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
+ L V L Y TT SL A + A VI DR++ +SRG+GFV D A++
Sbjct: 289 SSLIVRNLSYDTTTDSLG---AAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLS 345
Query: 89 D-PNPIIDGRKANVNLA 104
+ +DGR+ ++ A
Sbjct: 346 EMAGAEVDGRQVRLDFA 362
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
+F+G L + +++L F G VIT Q +SRG+G+ + +A +
Sbjct: 182 VFLGNLSFDADEETLAAFFEEKGLSATCRVIT--QEGRSRGFGYADFTSKEDYNKALELN 239
Query: 91 NPIIDGRKANVNLA 104
GR+ +N A
Sbjct: 240 GEDCCGREIRINPA 253
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 39.5 bits (88), Expect = 8e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
L++ L D+ LRE F+ YG I A V+ D + N S+G+GFV A +A +
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGN-SKGFGFVCFSSPEEATKAVTEM 272
Query: 91 N 91
N
Sbjct: 273 N 273
Score = 30.7 bits (66), Expect = 0.36
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 75
L+VG L T+ L E F+ G + V D T +S GY +V
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYV 59
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 39.1 bits (87), Expect = 0.001
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA-CKD 89
LFV L TTD+ L F+ +G I VI D++T +S Y F+ ERA K
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKM 181
Query: 90 PNPIIDGRKANVNLA 104
N +ID R+ +V+ +
Sbjct: 182 DNVLIDDRRIHVDFS 196
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 39.1 bits (87), Expect = 0.001
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 2 LMAGALPAESDGLLALGALPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVI 61
L ALPAES L++ + TK+++G L + + + + F YG +++ V
Sbjct: 5 LAHNALPAESGVLVSHLPFCFLRRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWV- 63
Query: 62 TDRQTNKSRGYGFVIMGDRTAAERACKD-PNPIIDGRKANVNLA 104
G+ F I DR AE A ++ I G++ V LA
Sbjct: 64 ----ARNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELA 103
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 22 GQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRT 81
G +D + ++FV G TT+ LR F YG ++E+ ++ D+ S+GY F+ +
Sbjct: 2 GDQDIS-KRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKH-GVSKGYAFITFESQE 59
Query: 82 AAE 84
A+
Sbjct: 60 VAD 62
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
L+VG LP + ++ + +HF YG +E ++ R R FV D +A +A + P
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRA-SFVDFVDIRSATKAHESP 66
Query: 91 NPIID 95
N I D
Sbjct: 67 NRIGD 71
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKS 69
++VGG+ +++ + HF YG + + V+ +R TN++
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKVVI--NRVTNQA 366
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIM 77
+ ++G L Y +++L E F ++ + VITDR+T + RG+GFV +
Sbjct: 83 RCYIGNLSYSVDEQALEEKFHDC-NVVDVRVITDRETGRPRGFGFVTL 129
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 18 GALPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSR 70
G +D+ KLFVG +P +K LR F YG I E ++ D+ T + +
Sbjct: 159 GGTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHK 211
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVI 61
KLFVG + H ++ LR F+ +G IEE V+
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVL 246
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 44 SLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPIIDGR 97
SL F YG IE+ +I QT KS+G+G+V + +A+RA + IIDG+
Sbjct: 78 SLESVFGPYGAIEDLSIIRT-QTGKSKGFGYVTYENAESAQRALAGTH-IIDGK 129
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA 86
LFV LP+ + + E F+ +G +++ ++T+R K +GYG+V ++A A
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNR-AGKPKGYGYVEYEQESSASTA 227
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIE 56
K+F+GGL + TT++ L+E+F+ YG +E
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMVE 229
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 36.7 bits (81), Expect = 0.006
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 29 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYG 73
+ LF+ LP TD L + F +G + A V D+QTN S+ +G
Sbjct: 229 SNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFG 273
Score = 33.5 bits (73), Expect = 0.051
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 45 LREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPIIDGRK 98
L + F +G + A V D+QTN S+ +GFV + +A+ A + N G K
Sbjct: 278 LMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAK 331
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 36.3 bits (80), Expect = 0.007
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 25 DTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAE 84
D + T L+VGGL T++ LR+HF +G++ ++ + RQ FV R AAE
Sbjct: 300 DRSITTLYVGGLEGKVTEQDLRDHFYQFGEL-RSISMVPRQ-----NCAFVCFTSRAAAE 353
Query: 85 RAC-KDPNP-IIDGRKANV 101
A + N I+ GR+ +
Sbjct: 354 AAADRSFNKLILKGRRLKI 372
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 35.9 bits (79), Expect = 0.010
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
+FVG L T + ++ E+F+ G+ E V + KS+G+ FV + + A E
Sbjct: 44 IFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAVESVLGRD 103
Query: 91 NPIID 95
+ +ID
Sbjct: 104 DHVID 108
Score = 31.9 bits (69), Expect = 0.16
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 23 QKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTA 82
+K T+ K+ + +P + + EHF+ G+I + + +T + +G+ V T
Sbjct: 115 EKQDTYRKVILKNIPSSIGESQILEHFSSSGEIASVYIPENLKTKERKGHCIVTFASVTE 174
Query: 83 AERACKDPNPIIDG 96
A K I G
Sbjct: 175 AFEVVKKRKHHIHG 188
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 35.9 bits (79), Expect = 0.010
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRG 71
K+FVG + + + L++ F +GD+ A +I DR +S+G
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQIIMDRVKKRSKG 121
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 35.1 bits (77), Expect = 0.017
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 23 QKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTA 82
+K T +LFVG L ++ ++E F YG++ E + NK +G+GF+ + R
Sbjct: 47 RKFTGRCRLFVGNL-IDCDEEEMKEMFKKYGEVAEVFI------NKEKGFGFIRLDTRLH 99
Query: 83 AERA 86
AE A
Sbjct: 100 AEAA 103
Score = 34.3 bits (75), Expect = 0.029
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
L V L T++ L + F+ +GD+E AVV+ D + +S+G+G V + A A
Sbjct: 128 LRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVR-GRSKGHGIVEFSRKNNAHNAM--- 183
Query: 91 NPIIDGRKANVNLAILGAKPR 111
+K + +L +LG PR
Sbjct: 184 ------QKISESLFLLGRTPR 198
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 34.7 bits (76), Expect = 0.022
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 59 VVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPIIDGRKANVNLA 104
+++ D+ T + RG+GFV +A++AC +I+ +K V A
Sbjct: 1 MLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKA 46
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 34.7 bits (76), Expect = 0.022
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 23 QKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRG 71
++DT LFV L + +T+++L++ FA G ++ A + + K G
Sbjct: 528 EEDTEGVTLFVKNLSFESTEEALKQKFAAVGPVKSATIAKKKDPKKPGG 576
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 34.7 bits (76), Expect = 0.022
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 28 WTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERAC 87
++++F+ H + +R F YG IE+ V+ D+ T ++RG +V ++A AC
Sbjct: 23 FSRVFIVCSKRHNAE-DIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALAC 81
Query: 88 KDPNPIIDGR 97
++ +DGR
Sbjct: 82 EE----MDGR 87
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 34.3 bits (75), Expect = 0.029
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 22 GQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRT 81
GQ +T + V L T + L+E F G I + D+ TN+S+G+ F+ R
Sbjct: 176 GQHETATIR--VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHRE 233
Query: 82 AAERA 86
A RA
Sbjct: 234 DAARA 238
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 34.3 bits (75), Expect = 0.029
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIE--EAVVITDRQTNKSRGYGFVIMGDRTAAERAC 87
KLF+GGL +++ ++ A E ++ DR+TNK +GY FV + ++
Sbjct: 105 KLFIGGLKDEHSEEDVKTALAPLSPFAPLEIKMVRDRETNKFKGYCFVNFPNEHIVDKLY 164
Query: 88 KDPNPIIDGRKANVNLAI-LGAKPRG 112
+ + G+ + A LGA RG
Sbjct: 165 LVRHIQVKGKDVEMKKAADLGAGGRG 190
Score = 31.9 bits (69), Expect = 0.16
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 25 DTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEA----VVITDRQTNKSRGYGFV 75
D+ KLFVGGL TT++++R +F + + EA V + KSR + FV
Sbjct: 4 DSKLMKLFVGGLNEDTTEETVRAYFKSFCEGSEADVSSVSLAKTPEGKSRKFCFV 58
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 33.9 bits (74), Expect = 0.039
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDP 90
++VGGL ++ + E F G + + DR T +GYGFV A+ A K
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 91 NPI-IDGRKANVNLA 104
N I + G+ VN A
Sbjct: 75 NMIKVYGKPIRVNKA 89
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 33.5 bits (73), Expect = 0.051
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKS---------------RGYGF 74
+L V +P+ D LR+ F +G I + +I + + +K G+GF
Sbjct: 69 RLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGF 128
Query: 75 VIMGDRTAAERACKDPN-PIIDGRKANVNLAI 105
V A +A + N I+DGRK V+L +
Sbjct: 129 VTFNTAAEANKAREKLNGTIVDGRKVEVSLCM 160
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 33.1 bits (72), Expect = 0.068
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDR 80
L V GL +TT++ LR F YG +E ++ D Q K R G + G R
Sbjct: 183 LGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYDHQA-KERTTGIELDGRR 231
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 33.1 bits (72), Expect = 0.068
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 29 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
T ++VG LP D L++ F+ YG I E V D +GY F+ +R
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD------KGYAFINARGEKRRQRCLT 668
Query: 89 DPNPIIDGRKANVNLAILGAKPRGNLAPDTNDNSS 123
G +N L L P + P +N ++S
Sbjct: 669 SSRR--HGNNSNTTLHTLA--PTTHKPPPSNQHNS 699
Score = 30.7 bits (66), Expect = 0.36
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 57 EAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPI-IDGRKANVNLA 104
E V+ D NKS+G+GFV R A +A + + + I G++ N A
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWA 589
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 32.7 bits (71), Expect = 0.090
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 89
++++G LPY TT+ +R F YG + R N YGFV D A+ A +
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRL--------RDINLKNNYGFVEFEDDRDADDAVYE 55
Query: 90 PN 91
N
Sbjct: 56 CN 57
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.5 bits (68), Expect = 0.21
Identities = 21/91 (23%), Positives = 40/91 (43%)
Query: 6 ALPAESDGLLALGALPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQ 65
AL A+ L A + +++VG + + ++ +R F +G I + + D
Sbjct: 79 ALQAQQMNALQTAAQKQRALALMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPL 138
Query: 66 TNKSRGYGFVIMGDRTAAERACKDPNPIIDG 96
K +G+ FV AA+ A + N ++ G
Sbjct: 139 NMKHKGFAFVEYDLPEAAQLALEQMNGVLLG 169
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/69 (17%), Positives = 31/69 (44%)
Query: 23 QKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTA 82
Q+ + ++++ + + ++ F +G + + + T K +GYGF+ ++ +
Sbjct: 193 QEAKKYARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQS 252
Query: 83 AERACKDPN 91
A A N
Sbjct: 253 ANDAIASMN 261
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 31.1 bits (67), Expect = 0.27
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKD 89
++FVG +P + L F G I E ++ D ++RGY FV+ + A+R K
Sbjct: 75 EVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFN-GQNRGYAFVVYTSKDDAKRCVKT 133
Query: 90 PN 91
N
Sbjct: 134 LN 135
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 31.1 bits (67), Expect = 0.27
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 61 ITDRQTNKSRGYGFVIMGDRTAAERACKDPNPIIDGRKA 99
+ D ++ +S+ YGFV D A E+A + I+G+K+
Sbjct: 94 VKDLKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQKS 132
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 31.1 bits (67), Expect = 0.27
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 57 EAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
E +V+ DR+T +SR +G+V D A A K
Sbjct: 4 EVIVVYDRETRRSRNFGYVTFRDEQDAADAMK 35
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 31.1 bits (67), Expect = 0.27
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 52 YGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPI-IDGRKANVNLAILGAKP 110
YG+I ++ D++T K +G+ F+ D+ + A + N I + GR V+ +P
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVDHCSNYRRP 61
Query: 111 RGNLAPD 117
+G+ D
Sbjct: 62 KGDEKDD 68
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 30.3 bits (65), Expect = 0.48
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIE 56
+FVG LP K+L+++F+ YG++E
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVE 48
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 30.3 bits (65), Expect = 0.48
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 29 TKLFVGGLPYHTTDKSLREHFA-VYGDIEEAVV-ITDRQTNKSRGYGFVIMGDRTAAERA 86
++LFVG +P + + + E F+ V +++ +V ++ Q K+RG+ F+ AA A
Sbjct: 233 SRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQKGKNRGFAFLEYESHQAASLA 292
Score = 29.5 bits (63), Expect = 0.84
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 18 GALPGQ-KDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVI 76
G PG + +++F+G +P + L F G I + ++ D + ++G+ F
Sbjct: 140 GKPPGTGSEKVCSQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCT 199
Query: 77 MGDRTAAERACK--DPNPIIDGRKANVNLAILGAK 109
++ A+ A K D I G++ V +++ ++
Sbjct: 200 FSNKDEAQNAVKKLDNKEIRPGKRLGVCISVANSR 234
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 30.3 bits (65), Expect = 0.48
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 75
LFV + + + E F+ YG+I+ V DR+T +GY V
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALV 339
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 29.9 bits (64), Expect = 0.63
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 26 TTWTK-----LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDR 80
TTWT+ +F+G +P + L G+I E + D T ++G+ F ++
Sbjct: 145 TTWTEESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQ 204
Query: 81 TAAERA 86
T+A +A
Sbjct: 205 TSAYQA 210
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.9 bits (64), Expect = 0.63
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYG-DIEEAVVITD-------RQTNKSRGYGFVIMGDRT 81
K++ G LP+ T L+ F + + +++ + +Q +SRG+GFV +
Sbjct: 51 KVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPE 110
Query: 82 AAERACKDPN-PIIDGRKANVNLAILGAKPRG 112
A+ A K N + GR + +I + G
Sbjct: 111 DAQTAVKSLNGKEVQGRTLKIAPSISRGRDGG 142
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.9 bits (64), Expect = 0.63
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 20 LPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGD 79
L G W +FV GLP T L + F+ YG IT+ + +GYGFV M +
Sbjct: 264 LSGLTPQGWC-IFVYGLPQEATPLFLYKLFSPYG------AITNIELKLDKGYGFVNMSN 316
Query: 80 RTAAERAC 87
E AC
Sbjct: 317 ---YEEAC 321
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.1 bits (62), Expect = 1.1
Identities = 9/45 (20%), Positives = 26/45 (57%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 75
+++G +P+ + +++ F +G + + +++ +S+GY FV
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFV 144
>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 64 RQTNKSRGYGFVIMGDRTAAERACKD 89
R +K GYG V+ GD A R C D
Sbjct: 1107 RLLDKDFGYGVVLSGDAVAVHRRCHD 1132
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERA 86
K++ G LP T+K L V+G + R+ + GY +V+ + A+RA
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFGKV--------REVDFKEGYAYVVFKENKDADRA 52
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 31 LFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
L+V L T L+ F+ YG + A ++T+ + ++ +G V M T +E A K
Sbjct: 351 LWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTM---TTSEEAAK 405
>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
Length = 483
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 7 LPAESDGLLALGALPGQK---DTTWTKLFVGGLP 37
L + + GLL + + D TWTKL+V GLP
Sbjct: 417 LRSRTSGLLLTSCMEHSQSLYDDTWTKLYVNGLP 450
>SB_5220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 546
Score = 28.3 bits (60), Expect = 1.9
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 51 VYGDIEEAV----VITDRQTNKSRGYGFVIMGDRTAAERACKD----PNPIIDGRKANVN 102
V G +EE + V R ++S YG V+ G E AC++ IID K NV
Sbjct: 343 VAGSMEEMLAGQDVYVKRVIDRSLSYGIVLSGQAVRLESACREYIAMHKEIIDQIKTNVK 402
Query: 103 LAILGAKPRGNLA 115
+ L + +++
Sbjct: 403 VLDLQTRQNSSVS 415
>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
Length = 1252
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 7 LPAESDGLLALGALPGQK---DTTWTKLFVGGLP 37
L + + GLL + + D TWTKL+V GLP
Sbjct: 1186 LRSRTSGLLLTSCMEHSQSLYDDTWTKLYVNGLP 1219
>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4085
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 29 TKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNK-SRGYGFVIMGDR 80
+KL G L H T ++REHFA E + V DR N+ R Y + ++ +
Sbjct: 2009 SKLIEGMLQAHPTIITIREHFAQLLAHEASRVFHDRLINQDDRAYFYDVLSQQ 2061
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIE-EAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
++++G LPY T + +++ F YG + +++ D GYGFV AE A
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKD-------GYGFVEFDYSDDAEDAVY 56
Query: 89 DPN 91
+ N
Sbjct: 57 ECN 59
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 30 KLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACK 88
+++VG LP +K L + F YG I + V + +R+ + FV D AE A K
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIAD-VDLKNRR-GAGPPFAFVEFEDPRDAEDAVK 318
>SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4)
Length = 407
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
Query: 89 DPNPIIDGRK-----ANVNLAILGAKPRGNLA 115
D +P ++GRK A+++ A++G KP+G LA
Sbjct: 252 DISPALNGRKPKGKLADISPALIGGKPKGKLA 283
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 96 GRKANVNLAILGAKPRGNLAPDT 118
G+ A+++ A++G KP+G LA ++
Sbjct: 296 GKLADISPALIGGKPKGKLADES 318
>SB_4854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
Query: 89 DPNPIIDGRK-----ANVNLAILGAKPRGNLA 115
D +P ++GRK A+++ A++G KP+G LA
Sbjct: 135 DISPALNGRKPKGKLADISPALIGGKPKGKLA 166
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 96 GRKANVNLAILGAKPRGNLAPDT 118
G+ A+++ A++G KP+G LA ++
Sbjct: 179 GKLADISPALIGGKPKGKLADES 201
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 89 DPNPIIDGRKANVNLAILGAKPRGNLAPDTNDNSS 123
+PNP ++GRK+N N + G K N P N S
Sbjct: 254 NPNPPLNGRKSNPNPPLNGRKSNPN--PPLNGRKS 286
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 89 DPNPIIDGRKANVNLAILGAKPRGN 113
+PNP ++GRK+N N + G K N
Sbjct: 265 NPNPPLNGRKSNPNPPLNGRKSNPN 289
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 89 DPNPIIDGRKANVNLAILGAKPRGN 113
+PNP ++GRK+N N + G K N
Sbjct: 298 NPNPPLNGRKSNPNPPLNGRKSNPN 322
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 52 YGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPI 93
YG+I ++ D++T K +G+ F+ D+ + A + N I
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGI 43
>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 43 KSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERAC 87
K E+ +V+GD +A +I D++T + GF D T ++C
Sbjct: 41 KKADEYLSVHGDKADASIIHDKETGITTKIGF----DGTQINKSC 81
>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
Length = 685
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 39 HTTDKSLREHFAVYGDIEEAVVITDRQTNKS 69
HTT++ R+H + DI + +I +R N++
Sbjct: 556 HTTNEEFRQHLSNSQDILQQTLIPERDLNRA 586
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 35 GLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFV 75
GLPY + + + + F + + IT + K+ G GFV
Sbjct: 44 GLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFV 84
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 4 AGALPAESDGLLALGALPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEE 57
AG P S G + + ++F+G LP D + E F+ YG I E
Sbjct: 332 AGPAPDRSTFGSKEGRMAARSAPDSHQVFIGNLPSGVKDADVNEVFSKYGTILE 385
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 30 KLFVGGLPYHTTDKSLREHF-AVYGDIEEAVVITDRQ 65
K+FV +P+ + ++L++H V GD+ A + D +
Sbjct: 94 KVFVSNIPFESRWQNLKDHMNKVVGDVAFAEIFEDEK 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,348,959
Number of Sequences: 59808
Number of extensions: 165766
Number of successful extensions: 367
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 135
length of query: 124
length of database: 16,821,457
effective HSP length: 74
effective length of query: 50
effective length of database: 12,395,665
effective search space: 619783250
effective search space used: 619783250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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