GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002685-TA|BGIBMGA002685-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (124 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-3|CAD29632.1|  568|Anopheles gambiae putative apyrase/n...    23   4.1  
AJ439398-2|CAD28125.1|  568|Anopheles gambiae putative 5' nucleo...    23   4.1  
AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide recepto...    22   7.2  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    21   9.5  

>AJ441131-3|CAD29632.1|  568|Anopheles gambiae putative
           apyrase/nucleotidase protein.
          Length = 568

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 65  QTNKSRGYGFVIMGDRTAAERACKDPNPIIDG 96
           Q N+  GY  V++     A   C   N I DG
Sbjct: 354 QANRQIGYSAVMLAKPDCARGECNFGNFITDG 385


>AJ439398-2|CAD28125.1|  568|Anopheles gambiae putative 5'
           nucleotidase protein.
          Length = 568

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 65  QTNKSRGYGFVIMGDRTAAERACKDPNPIIDG 96
           Q N+  GY  V++     A   C   N I DG
Sbjct: 354 QANRQIGYSAVMLAKPDCARGECNFGNFITDG 385


>AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide receptor
           protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 93  IIDGRKANVNLAILGAKPRGNLAPD 117
           +I G K      +L  KPRG  +PD
Sbjct: 364 VIFGEKFKRIFLLLFCKPRGRQSPD 388


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 38  YHTTDKSLREHFAVYGDIEEAVVIT 62
           Y  T+K L E  A    +EEA+ +T
Sbjct: 515 YEETEKDLEEKRARLQTLEEALPVT 539


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,600
Number of Sequences: 2123
Number of extensions: 4889
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 124
length of database: 516,269
effective HSP length: 57
effective length of query: 67
effective length of database: 395,258
effective search space: 26482286
effective search space used: 26482286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)